RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 MICALCLQ6ZW33 695 aa17.23■□□□□ 0.35
CHD4-201ENST00000357008 THEMISQ8N1K5 641 aaPredicted RBP17.23■□□□□ 0.35
CHD4-201ENST00000357008 IFIT1P09914 478 aaKnown RBP17.22■□□□□ 0.35
CHD4-201ENST00000357008 CACNA2D4Q7Z3S7 1137 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 CETN2P41208 172 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 SNW1Q13573 536 aaKnown RBP17.22■□□□□ 0.35
CHD4-201ENST00000357008 NUDT16Q96DE0 195 aaKnown RBP17.22■□□□□ 0.35
CHD4-201ENST00000357008 GUCY1B3Q02153 619 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 LRSAM1Q6UWE0 723 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 TMC6Q7Z403 805 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 PIBF1Q8WXW3 757 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 TAF7Q15545 349 aaPredicted RBP17.22■□□□□ 0.35
CHD4-201ENST00000357008 METTL24Q5JXM2 366 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 VPS36Q86VN1 386 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 DHX37Q8IY37 1157 aaKnown RBP17.22■□□□□ 0.35
CHD4-201ENST00000357008 PAF1Q8N7H5 531 aa17.22■□□□□ 0.35
CHD4-201ENST00000357008 FGFR1OPO95684 399 aaKnown RBP17.21■□□□□ 0.35
CHD4-201ENST00000357008 NUP88Q99567 741 aaPredicted RBP17.21■□□□□ 0.35
CHD4-201ENST00000357008 TSG101Q99816 390 aa17.21■□□□□ 0.35
CHD4-201ENST00000357008 IGHMBP2P38935 993 aaKnown RBP17.21■□□□□ 0.35
CHD4-201ENST00000357008 CCDC141Q6ZP82 1450 aa17.21■□□□□ 0.35
CHD4-201ENST00000357008 IGHDP01880 384 aa17.21■□□□□ 0.35
CHD4-201ENST00000357008 MAPK8IP2Q13387 824 aaPredicted RBP17.21■□□□□ 0.35
CHD4-201ENST00000357008 SMARCC1Q92922 1105 aaPredicted RBP17.21■□□□□ 0.35
CHD4-201ENST00000357008 EVI5LQ96CN4 794 aa17.21■□□□□ 0.35
CHD4-201ENST00000357008 GTF2F1P35269 517 aaKnown RBP eCLIP17.21■□□□□ 0.342e-6■□□□□ 10.8
CHD4-201ENST00000357008 RBM27Q9P2N5 1060 aaKnown RBP17.21■□□□□ 0.34
CHD4-201ENST00000357008 TFIP11Q9UBB9 837 aaKnown RBP17.21■□□□□ 0.34
CHD4-201ENST00000357008 NAPBQ9H115 298 aa17.2■□□□□ 0.34
CHD4-201ENST00000357008 ZNF76P36508 570 aa17.2■□□□□ 0.34
CHD4-201ENST00000357008 CEP135Q66GS9 1140 aa17.2■□□□□ 0.34
CHD4-201ENST00000357008 F6X3S4 739 aa17.2■□□□□ 0.34
CHD4-201ENST00000357008 CCDC150Q8NCX0 1101 aa17.2■□□□□ 0.34
CHD4-201ENST00000357008 TTC22Q5TAA0 569 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 ZNF287Q9HBT7 754 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 DESP17661 470 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 CPLX3Q8WVH0 158 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 DNAAF4Q8WXU2 420 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 IFFO1Q0D2I5 559 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 CCDC8Q9H0W5 538 aaPredicted RBP17.19■□□□□ 0.34
CHD4-201ENST00000357008 ECHDC1Q9NTX5 307 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 ZNF213O14771 459 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 ABCF2Q9UG63 623 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 POTEJP0CG39 1038 aa17.19■□□□□ 0.34
CHD4-201ENST00000357008 SPINK5Q9NQ38 1064 aaPredicted RBP17.19■□□□□ 0.34
CHD4-201ENST00000357008 CCDC91Q7Z6B0 441 aa17.18■□□□□ 0.34
CHD4-201ENST00000357008 SLC12A7Q9Y666 1083 aa17.18■□□□□ 0.34
CHD4-201ENST00000357008 CTCFLQ8NI51 663 aaPredicted RBP17.18■□□□□ 0.34
CHD4-201ENST00000357008 CCDC85AQ96PX6 553 aaPredicted RBP17.18■□□□□ 0.34
CHD4-201ENST00000357008 CCDC113Q9H0I3 377 aa17.18■□□□□ 0.34
CHD4-201ENST00000357008 CCDC171Q6TFL3 1326 aa17.18■□□□□ 0.34
CHD4-201ENST00000357008 USP5P45974 858 aa17.18■□□□□ 0.34
CHD4-201ENST00000357008 GOLGA8BA8MQT2 603 aa17.18■□□□□ 0.34
CHD4-201ENST00000357008 HCLS1P14317 486 aaPredicted RBP17.18■□□□□ 0.34
CHD4-201ENST00000357008 SEC63Q9UGP8 760 aaKnown RBP17.18■□□□□ 0.34
CHD4-201ENST00000357008 HDAC1Q13547 482 aaPredicted RBP17.17■□□□□ 0.34
CHD4-201ENST00000357008 NAA15Q9BXJ9 866 aaKnown RBP17.17■□□□□ 0.34
CHD4-201ENST00000357008 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
CHD4-201ENST00000357008 XRCC6P12956 609 aaKnown RBP eCLIP17.17■□□□□ 0.34
CHD4-201ENST00000357008 SSRP1Q08945 709 aaKnown RBP17.17■□□□□ 0.34
CHD4-201ENST00000357008 SSR1P43307 286 aaKnown RBP17.17■□□□□ 0.34
CHD4-201ENST00000357008 KCNH5Q8NCM2 988 aa17.17■□□□□ 0.34
CHD4-201ENST00000357008 RAB34Q9BZG1 259 aa17.17■□□□□ 0.34
CHD4-201ENST00000357008 MINDY4BA8MYZ0 360 aa17.16■□□□□ 0.34
CHD4-201ENST00000357008 BIN1O00499 593 aa17.16■□□□□ 0.34
CHD4-201ENST00000357008 CCT2P78371 535 aaKnown RBP17.16■□□□□ 0.34
CHD4-201ENST00000357008 CCDC178Q5BJE1 867 aa17.16■□□□□ 0.34
CHD4-201ENST00000357008 MYD88Q99836 296 aa17.16■□□□□ 0.34
CHD4-201ENST00000357008 LARP6Q9BRS8 491 aaKnown RBP17.16■□□□□ 0.34
CHD4-201ENST00000357008 SPDYE4A6NLX3 237 aa17.16■□□□□ 0.34
CHD4-201ENST00000357008 RNF187Q5TA31 235 aaPredicted RBP17.16■□□□□ 0.34
CHD4-201ENST00000357008 KIF20AO95235 890 aa17.16■□□□□ 0.34
CHD4-201ENST00000357008 SMC1AQ14683 1233 aaKnown RBP17.16■□□□□ 0.34
CHD4-201ENST00000357008 ALS2CR12Q96Q35 445 aa17.16■□□□□ 0.34
CHD4-201ENST00000357008 GOLGA8AA7E2F4 631 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 GCOM1H8Y6P7 765 aaPredicted RBP17.15■□□□□ 0.34
CHD4-201ENST00000357008 MYZAPP0CAP1 466 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 MAP3K12Q12852 859 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 TRERF1Q96PN7 1200 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 RNF41Q9H4P4 317 aaPredicted RBP17.15■□□□□ 0.34
CHD4-201ENST00000357008 ZSCAN16Q9H4T2 348 aaPredicted RBP17.15■□□□□ 0.34
CHD4-201ENST00000357008 HMG20BQ9P0W2 317 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 IL16Q14005 1332 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 NUCB1Q02818 461 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 CTR9Q6PD62 1173 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 KRT222Q8N1A0 295 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 TMX3Q96JJ7 454 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 STARD3NLO95772 234 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 ZSCAN22P10073 491 aaPredicted RBP17.15■□□□□ 0.34
CHD4-201ENST00000357008 FLIIQ13045 1269 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 NOLC1Q14978 699 aaKnown RBP eCLIP17.15■□□□□ 0.343e-6■□□□□ 9.5
CHD4-201ENST00000357008 IQCA1Q86XH1 822 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 ZHX1Q9UKY1 873 aaPredicted RBP17.15■□□□□ 0.34
CHD4-201ENST00000357008 TDRD12Q587J7 1177 aaKnown RBP17.15■□□□□ 0.34
CHD4-201ENST00000357008 KANK3Q6NY19 840 aa17.15■□□□□ 0.34
CHD4-201ENST00000357008 GOLGA6L10A0A0M3HER8 536 aa17.14■□□□□ 0.33
CHD4-201ENST00000357008 GNG11P61952 73 aa17.14■□□□□ 0.33
CHD4-201ENST00000357008 TMX1Q9H3N1 280 aa17.14■□□□□ 0.33
CHD4-201ENST00000357008 DBF4Q9UBU7 674 aaPredicted RBP17.14■□□□□ 0.33
CHD4-201ENST00000357008 LMAN1P49257 510 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms