RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 STAP2Q9UGK3 403 aa18.2■□□□□ 0.5
VIPAS39-202ENST00000343765 PALD1Q9ULE6 856 aa18.2■□□□□ 0.5
VIPAS39-202ENST00000343765 MAP3K2Q9Y2U5 619 aa18.2■□□□□ 0.5
VIPAS39-202ENST00000343765 AK9Q5TCS8 1911 aa18.2■□□□□ 0.5
VIPAS39-202ENST00000343765 DBF4Q9UBU7 674 aaPredicted RBP18.19■□□□□ 0.5
VIPAS39-202ENST00000343765 OS9Q13438 667 aaPredicted RBP18.19■□□□□ 0.5
VIPAS39-202ENST00000343765 POLA2Q14181 598 aa18.19■□□□□ 0.5
VIPAS39-202ENST00000343765 GIGYF1O75420 1035 aaPredicted RBP18.19■□□□□ 0.5
VIPAS39-202ENST00000343765 KDM3BQ7LBC6 1761 aa18.18■□□□□ 0.5
VIPAS39-202ENST00000343765 BAG4O95429 457 aaKnown RBP18.18■□□□□ 0.5
VIPAS39-202ENST00000343765 IL25Q9H293 177 aa18.18■□□□□ 0.5
VIPAS39-202ENST00000343765 RAB11FIP3O75154 756 aa18.18■□□□□ 0.5
VIPAS39-202ENST00000343765 AIMP1Q12904 312 aaKnown RBP18.18■□□□□ 0.5
VIPAS39-202ENST00000343765 CWF19L2Q2TBE0 894 aaKnown RBP18.18■□□□□ 0.5
VIPAS39-202ENST00000343765 ADAMTSL3P82987 1691 aa18.18■□□□□ 0.5
VIPAS39-202ENST00000343765 LMO7Q8WWI1 1683 aa18.17■□□□□ 0.5
VIPAS39-202ENST00000343765 GOLGA6L22H0YM25 854 aa18.17■□□□□ 0.5
VIPAS39-202ENST00000343765 MCCP23508 829 aa18.17■□□□□ 0.5
VIPAS39-202ENST00000343765 NLRP2Q9NX02 1062 aa18.17■□□□□ 0.5
VIPAS39-202ENST00000343765 C9orf78Q9NZ63 289 aaPredicted RBP18.17■□□□□ 0.5
VIPAS39-202ENST00000343765 SLIT3O75094 1523 aa18.17■□□□□ 0.5
VIPAS39-202ENST00000343765 MCTP1Q6DN14 999 aa18.17■□□□□ 0.5
VIPAS39-202ENST00000343765 SLC39A6Q13433 755 aa18.16■□□□□ 0.5
VIPAS39-202ENST00000343765 KIF1BPQ96EK5 621 aa18.16■□□□□ 0.5
VIPAS39-202ENST00000343765 CHMP4AQ9BY43 222 aa18.16■□□□□ 0.5
VIPAS39-202ENST00000343765 N4BP2Q86UW6 1770 aaPredicted RBP18.16■□□□□ 0.5
VIPAS39-202ENST00000343765 C1orf167Q5SNV9 1468 aa18.16■□□□□ 0.5
VIPAS39-202ENST00000343765 FOXD4L5Q5VV16 416 aaPredicted RBP18.16■□□□□ 0.5
VIPAS39-202ENST00000343765 FOXD4L4Q8WXT5 416 aaPredicted RBP18.16■□□□□ 0.5
VIPAS39-202ENST00000343765 ERBB3P21860 1342 aa18.15■□□□□ 0.5
VIPAS39-202ENST00000343765 NUCB2P80303 420 aa18.15■□□□□ 0.5
VIPAS39-202ENST00000343765 UPF3BQ9BZI7 483 aaKnown RBP18.15■□□□□ 0.5
VIPAS39-202ENST00000343765 C19orf44Q9H6X5 657 aa18.15■□□□□ 0.5
VIPAS39-202ENST00000343765 PHRF1Q9P1Y6 1649 aaKnown RBP18.15■□□□□ 0.5
VIPAS39-202ENST00000343765 PI4K2BQ8TCG2 481 aa18.14■□□□□ 0.5
VIPAS39-202ENST00000343765 CABLES1Q8TDN4 633 aa18.14■□□□□ 0.5
VIPAS39-202ENST00000343765 PA2G4Q9UQ80 394 aaKnown RBP18.14■□□□□ 0.5
VIPAS39-202ENST00000343765 SKOR2Q2VWA4 1001 aaPredicted RBP18.14■□□□□ 0.49
VIPAS39-202ENST00000343765 RAPGEF4Q8WZA2 1011 aa18.14■□□□□ 0.49
VIPAS39-202ENST00000343765 NCAPD2Q15021 1401 aa18.14■□□□□ 0.49
VIPAS39-202ENST00000343765 TMX3Q96JJ7 454 aa18.13■□□□□ 0.49
VIPAS39-202ENST00000343765 DDX49Q9Y6V7 483 aaKnown RBP18.13■□□□□ 0.49
VIPAS39-202ENST00000343765 AOX1Q06278 1338 aa18.13■□□□□ 0.49
VIPAS39-202ENST00000343765 KSR2Q6VAB6 950 aa18.13■□□□□ 0.49
VIPAS39-202ENST00000343765 CHAMP1Q96JM3 812 aa18.13■□□□□ 0.49
VIPAS39-202ENST00000343765 GRPEL1Q9HAV7 217 aa18.13■□□□□ 0.49
VIPAS39-202ENST00000343765 GAS2L3Q86XJ1 694 aa18.13■□□□□ 0.49
VIPAS39-202ENST00000343765 CWC22Q9HCG8 908 aaKnown RBP18.13■□□□□ 0.49
VIPAS39-202ENST00000343765 TUBGCP6Q96RT7 1819 aa18.12■□□□□ 0.49
VIPAS39-202ENST00000343765 CSB-PGBD3P0DP91 1061 aa18.12■□□□□ 0.49
VIPAS39-202ENST00000343765 ATF3P18847 181 aa18.12■□□□□ 0.49
VIPAS39-202ENST00000343765 PTMSP20962 102 aa18.12■□□□□ 0.49
VIPAS39-202ENST00000343765 MRE11P49959 708 aa18.12■□□□□ 0.49
VIPAS39-202ENST00000343765 MYL6BP14649 208 aa18.12■□□□□ 0.49
VIPAS39-202ENST00000343765 NCLP19338 710 aaKnown RBP18.12■□□□□ 0.49
VIPAS39-202ENST00000343765 CYP2E1P05181 493 aaPredicted RBP18.11■□□□□ 0.49
VIPAS39-202ENST00000343765 CHRNA2Q15822 529 aa18.11■□□□□ 0.49
VIPAS39-202ENST00000343765 TRPM3Q9HCF6 1732 aaPredicted RBP18.11■□□□□ 0.49
VIPAS39-202ENST00000343765 RGPD5Q99666 1765 aa18.11■□□□□ 0.49
VIPAS39-202ENST00000343765 HSP90AB4PQ58FF6 505 aa18.1■□□□□ 0.49
VIPAS39-202ENST00000343765 CLEC17AQ6ZS10 378 aa18.1■□□□□ 0.49
VIPAS39-202ENST00000343765 HYPKQ9NX55 129 aa18.1■□□□□ 0.49
VIPAS39-202ENST00000343765 HSPA2P54652 639 aa18.1■□□□□ 0.49
VIPAS39-202ENST00000343765 CNTROBQ8N137 903 aa18.1■□□□□ 0.49
VIPAS39-202ENST00000343765 ZDHHC9Q9Y397 364 aa18.1■□□□□ 0.49
VIPAS39-202ENST00000343765 ALDH1L1O75891 902 aa18.09■□□□□ 0.49
VIPAS39-202ENST00000343765 PIP4K2AP48426 406 aaPredicted RBP18.09■□□□□ 0.49
VIPAS39-202ENST00000343765 CWC27Q6UX04 472 aaKnown RBP18.09■□□□□ 0.49
VIPAS39-202ENST00000343765 NFATC2IPQ8NCF5 419 aa18.09■□□□□ 0.49
VIPAS39-202ENST00000343765 ZNF790Q6PG37 636 aa18.09■□□□□ 0.49
VIPAS39-202ENST00000343765 HEG1Q9ULI3 1381 aa18.09■□□□□ 0.49
VIPAS39-202ENST00000343765 TATP17735 454 aaPredicted RBP18.08■□□□□ 0.49
VIPAS39-202ENST00000343765 CLASRPQ8N2M8 674 aaKnown RBP18.08■□□□□ 0.49
VIPAS39-202ENST00000343765 SUCLG2Q96I99 432 aa18.08■□□□□ 0.49
VIPAS39-202ENST00000343765 OVOS2A0A0G2JMS6 1433 aa18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 ANAPC15P60006 121 aa18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 RIC3Q7Z5B4 369 aa18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 DDX21Q9NR30 783 aaKnown RBP eCLIP18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 SPG7Q9UQ90 795 aa18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 TMEM94Q12767 1356 aa18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 GRM8O00222 908 aa18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 FAM43AQ8N2R8 423 aa18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 BICC1Q9H694 974 aaKnown RBP18.08■□□□□ 0.48
VIPAS39-202ENST00000343765 NPHP3Q7Z494 1330 aa18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 DDX58O95786 925 aaKnown RBP18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 PDIA6Q15084 440 aa18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 KLHL40Q2TBA0 621 aa18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 SLC52A2Q9HAB3 445 aa18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 SGSM2O43147 1006 aa18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 PRPF40AO75400 957 aaKnown RBP18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 IFIT2P09913 472 aaKnown RBP18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 LINS1Q8NG48 757 aa18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 SIL1Q9H173 461 aa18.07■□□□□ 0.48
VIPAS39-202ENST00000343765 PHKG2P15735 406 aa18.06■□□□□ 0.48
VIPAS39-202ENST00000343765 MCM2P49736 904 aa18.06■□□□□ 0.48
VIPAS39-202ENST00000343765 MTX1Q13505 466 aa18.06■□□□□ 0.48
VIPAS39-202ENST00000343765 CAVIN1Q6NZI2 390 aaKnown RBP18.06■□□□□ 0.48
VIPAS39-202ENST00000343765 KDM6AO15550 1401 aaPredicted RBP18.06■□□□□ 0.48
VIPAS39-202ENST00000343765 HSPA4P34932 840 aa18.06■□□□□ 0.48
VIPAS39-202ENST00000343765 AACSQ86V21 672 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms