RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 DDX54Q8TDD1 881 aaKnown RBP18.62■□□□□ 0.57
TPM3-208ENST00000341485 F6X3S4 739 aa18.61■□□□□ 0.57
TPM3-208ENST00000341485 C16orf71Q8IYS4 520 aaPredicted RBP18.61■□□□□ 0.57
TPM3-208ENST00000341485 MRC1P22897 1456 aa18.61■□□□□ 0.57
TPM3-208ENST00000341485 CDC45O75419 566 aa18.61■□□□□ 0.57
TPM3-208ENST00000341485 SNX21Q969T3 373 aa18.61■□□□□ 0.57
TPM3-208ENST00000341485 KIF2CQ99661 725 aa18.61■□□□□ 0.57
TPM3-208ENST00000341485 TTC22Q5TAA0 569 aa18.6■□□□□ 0.57
TPM3-208ENST00000341485 CCT4P50991 539 aaKnown RBP18.59■□□□□ 0.57
TPM3-208ENST00000341485 SLC4A10Q6U841 1118 aa18.59■□□□□ 0.57
TPM3-208ENST00000341485 JCADQ9P266 1359 aa18.59■□□□□ 0.57
TPM3-208ENST00000341485 SHANK3Q9BYB0 1731 aa18.59■□□□□ 0.57
TPM3-208ENST00000341485 CACNA1FO60840 1977 aa18.59■□□□□ 0.57
TPM3-208ENST00000341485 SLC39A6Q13433 755 aa18.59■□□□□ 0.57
TPM3-208ENST00000341485 ZNF790Q6PG37 636 aa18.59■□□□□ 0.57
TPM3-208ENST00000341485 TTC5Q8N0Z6 440 aa18.59■□□□□ 0.57
TPM3-208ENST00000341485 OTUD7AQ8TE49 926 aaPredicted RBP18.59■□□□□ 0.57
TPM3-208ENST00000341485 CHMP5Q9NZZ3 219 aa18.58■□□□□ 0.57
TPM3-208ENST00000341485 NRAPQ86VF7 1730 aa18.58■□□□□ 0.56
TPM3-208ENST00000341485 SMARCA5O60264 1052 aaPredicted RBP18.58■□□□□ 0.56
TPM3-208ENST00000341485 FLIIQ13045 1269 aa18.58■□□□□ 0.56
TPM3-208ENST00000341485 GIGYF1O75420 1035 aaPredicted RBP18.57■□□□□ 0.56
TPM3-208ENST00000341485 FKBP5Q13451 457 aaPredicted RBP18.57■□□□□ 0.56
TPM3-208ENST00000341485 NKX1-1Q15270 411 aaPredicted RBP18.57■□□□□ 0.56
TPM3-208ENST00000341485 HEG1Q9ULI3 1381 aa18.56■□□□□ 0.56
TPM3-208ENST00000341485 ERVV-2B6SEH9 535 aa18.56■□□□□ 0.56
TPM3-208ENST00000341485 DISP2A7MBM2 1401 aa18.56■□□□□ 0.56
TPM3-208ENST00000341485 APBB1O00213 710 aa18.55■□□□□ 0.56
TPM3-208ENST00000341485 CHPF2Q9P2E5 772 aa18.55■□□□□ 0.56
TPM3-208ENST00000341485 NWD2Q9ULI1 1742 aa18.55■□□□□ 0.56
TPM3-208ENST00000341485 HMMRO75330 724 aa18.54■□□□□ 0.56
TPM3-208ENST00000341485 DDIT3P35638 169 aa18.54■□□□□ 0.56
TPM3-208ENST00000341485 CCDC9Q9Y3X0 531 aaKnown RBP18.54■□□□□ 0.56
TPM3-208ENST00000341485 WNK3Q9BYP7 1800 aa18.54■□□□□ 0.56
TPM3-208ENST00000341485 N4BP2Q86UW6 1770 aaPredicted RBP18.54■□□□□ 0.56
TPM3-208ENST00000341485 DBF4Q9UBU7 674 aaPredicted RBP18.53■□□□□ 0.56
TPM3-208ENST00000341485 PRAMEF22A3QJZ6 481 aa18.53■□□□□ 0.56
TPM3-208ENST00000341485 EXOC5O00471 708 aa18.53■□□□□ 0.56
TPM3-208ENST00000341485 GNAI2P04899 355 aa18.53■□□□□ 0.56
TPM3-208ENST00000341485 FMNL2Q96PY5 1086 aa18.53■□□□□ 0.56
TPM3-208ENST00000341485 PHAXQ9H814 394 aaKnown RBP18.53■□□□□ 0.56
TPM3-208ENST00000341485 THRAP3Q9Y2W1 955 aaKnown RBP18.53■□□□□ 0.56
TPM3-208ENST00000341485 SLIT2O94813 1529 aa18.53■□□□□ 0.56
TPM3-208ENST00000341485 SPATA31A1Q5TZJ5 1347 aa18.52■□□□□ 0.56
TPM3-208ENST00000341485 CD2BP2O95400 341 aaKnown RBP18.52■□□□□ 0.56
TPM3-208ENST00000341485 MCM4P33991 863 aa18.52■□□□□ 0.56
TPM3-208ENST00000341485 ZNF496Q96IT1 587 aaPredicted RBP18.52■□□□□ 0.56
TPM3-208ENST00000341485 CDCA7Q9BWT1 371 aaPredicted RBP18.52■□□□□ 0.56
TPM3-208ENST00000341485 SDSP20132 328 aa18.51■□□□□ 0.55
TPM3-208ENST00000341485 C8orf37Q96NL8 207 aa18.51■□□□□ 0.55
TPM3-208ENST00000341485 RBM42Q9BTD8 480 aaKnown RBP18.51■□□□□ 0.55
TPM3-208ENST00000341485 NGLY1Q96IV0 654 aa18.51■□□□□ 0.55
TPM3-208ENST00000341485 C5P01031 1676 aa18.5■□□□□ 0.55
TPM3-208ENST00000341485 SNRPA1P09661 255 aaKnown RBP18.5■□□□□ 0.55
TPM3-208ENST00000341485 SPATA31A6Q5VVP1 1343 aa18.5■□□□□ 0.55
TPM3-208ENST00000341485 EIF5BO60841 1220 aaKnown RBP18.5■□□□□ 0.55
TPM3-208ENST00000341485 ANXA1P04083 346 aa18.5■□□□□ 0.55
TPM3-208ENST00000341485 PXDNLA1KZ92 1463 aa18.49■□□□□ 0.55
TPM3-208ENST00000341485 GNAI3P08754 354 aa18.49■□□□□ 0.55
TPM3-208ENST00000341485 SPATA31A5Q5VU36 1347 aa18.49■□□□□ 0.55
TPM3-208ENST00000341485 TNS2Q63HR2 1409 aa18.49■□□□□ 0.55
TPM3-208ENST00000341485 SPATA31A7Q8IWB4 1347 aa18.49■□□□□ 0.55
TPM3-208ENST00000341485 IL27Q8NEV9 243 aa18.49■□□□□ 0.55
TPM3-208ENST00000341485 TMOD3Q9NYL9 352 aa18.49■□□□□ 0.55
TPM3-208ENST00000341485 TOGARAM1Q9Y4F4 1720 aa18.48■□□□□ 0.55
TPM3-208ENST00000341485 UNC5CLQ8IV45 518 aa18.48■□□□□ 0.55
TPM3-208ENST00000341485 USP26Q9BXU7 913 aa18.48■□□□□ 0.55
TPM3-208ENST00000341485 HYPKQ9NX55 129 aa18.48■□□□□ 0.55
TPM3-208ENST00000341485 K7ELQ4 463 aaPredicted RBP18.47■□□□□ 0.55
TPM3-208ENST00000341485 OSBPL3Q9H4L5 887 aa18.47■□□□□ 0.55
TPM3-208ENST00000341485 BRPF3Q9ULD4 1205 aa18.47■□□□□ 0.55
TPM3-208ENST00000341485 EXOC6BQ9Y2D4 811 aa18.47■□□□□ 0.55
TPM3-208ENST00000341485 PNMA6EA0A0J9YXQ4 647 aa18.46■□□□□ 0.55
TPM3-208ENST00000341485 ATP8B2P98198 1209 aa18.46■□□□□ 0.55
TPM3-208ENST00000341485 DDB1Q16531 1140 aa18.46■□□□□ 0.55
TPM3-208ENST00000341485 DDX21Q9NR30 783 aaKnown RBP eCLIP18.46■□□□□ 0.55
TPM3-208ENST00000341485 PAPPAQ13219 1627 aa18.46■□□□□ 0.55
TPM3-208ENST00000341485 HSPA1LP34931 641 aa18.46■□□□□ 0.55
TPM3-208ENST00000341485 PDE1AP54750 535 aa18.46■□□□□ 0.55
TPM3-208ENST00000341485 PROSER3Q2NL68 480 aa18.46■□□□□ 0.55
TPM3-208ENST00000341485 CIZ1Q9ULV3 898 aaPredicted RBP18.46■□□□□ 0.55
TPM3-208ENST00000341485 SALL3Q9BXA9 1300 aa18.45■□□□□ 0.54
TPM3-208ENST00000341485 TUBGCP6Q96RT7 1819 aa18.45■□□□□ 0.54
TPM3-208ENST00000341485 MEX3CQ5U5Q3 659 aaKnown RBP18.45■□□□□ 0.54
TPM3-208ENST00000341485 BARGINQ6ZT62 677 aa18.45■□□□□ 0.54
TPM3-208ENST00000341485 USP16Q9Y5T5 823 aa18.45■□□□□ 0.54
TPM3-208ENST00000341485 LRRFIP2Q9Y608 721 aaKnown RBP18.45■□□□□ 0.54
TPM3-208ENST00000341485 LAMB4A4D0S4 1761 aa18.44■□□□□ 0.54
TPM3-208ENST00000341485 UBR2Q8IWV8 1755 aa18.44■□□□□ 0.54
TPM3-208ENST00000341485 PI4KAP2A4QPH2 592 aa18.44■□□□□ 0.54
TPM3-208ENST00000341485 CASC1Q6TDU7 716 aa18.44■□□□□ 0.54
TPM3-208ENST00000341485 PI4KAP1Q8N8J0 262 aa18.44■□□□□ 0.54
TPM3-208ENST00000341485 DNAAF4Q8WXU2 420 aa18.44■□□□□ 0.54
TPM3-208ENST00000341485 USP44Q9H0E7 712 aa18.44■□□□□ 0.54
TPM3-208ENST00000341485 LRP6O75581 1613 aa18.44■□□□□ 0.54
TPM3-208ENST00000341485 MYL6BP14649 208 aa18.43■□□□□ 0.54
TPM3-208ENST00000341485 RABEP1Q15276 862 aa18.43■□□□□ 0.54
TPM3-208ENST00000341485 PTCD1O75127 700 aaKnown RBP18.43■□□□□ 0.54
TPM3-208ENST00000341485 DDX58O95786 925 aaKnown RBP18.43■□□□□ 0.54
TPM3-208ENST00000341485 VPS72Q15906 364 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms