RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 C8orf76Q96K31 380 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 MEIS3Q99687 375 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 DNAJC25Q9H1X3 360 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 ANO10Q9NW15 660 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 DNAI1Q9UI46 699 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 FGD5Q6ZNL6 1462 aa10.13□□□□□ -0.79
RTN3-202ENST00000339997 PRG4Q92954 1404 aaPredicted RBP10.13□□□□□ -0.79
RTN3-202ENST00000339997 VGLL3A8MV65 326 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 BICDL1Q6ZP65 573 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 UBAC1Q9BSL1 405 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 CASQ1P31415 396 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 SNW1Q13573 536 aaKnown RBP10.12□□□□□ -0.79
RTN3-202ENST00000339997 KIF1BPQ96EK5 621 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 DYNC1I1O14576 645 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 GLRX3O76003 335 aaKnown RBP10.12□□□□□ -0.79
RTN3-202ENST00000339997 RAPGEF3O95398 923 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 SKILP12757 684 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 KRT24Q2M2I5 525 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 DACT1Q9NYF0 836 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 GOLGA6L10A0A0M3HER8 536 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 SSR1P43307 286 aaKnown RBP10.12□□□□□ -0.79
RTN3-202ENST00000339997 ANO6Q4KMQ2 910 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 LRSAM1Q6UWE0 723 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 PBRM1Q86U86 1689 aa10.12□□□□□ -0.79
RTN3-202ENST00000339997 SMTNL1A8MU46 457 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 BMP2KLQ5H9B9 411 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 MPRIPQ6WCQ1 1025 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 ZNF526Q8TF50 670 aaPredicted RBP10.11□□□□□ -0.79
RTN3-202ENST00000339997 MPHOSPH8Q99549 860 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 NESP48681 1621 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 SYCP1Q15431 976 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 FAM173BQ6P4H8 233 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 CHAMP1Q96JM3 812 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 DRC1Q96MC2 740 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 LRP2BPQ9P2M1 347 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 ZKSCAN5Q9Y2L8 839 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 KIF5CO60282 957 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 PTGS1P23219 599 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 NUP88Q99567 741 aaPredicted RBP10.11□□□□□ -0.79
RTN3-202ENST00000339997 HFM1A2PYH4 1435 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 FAM69CQ0P6D2 419 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 STIM1Q13586 685 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 CNNM3Q8NE01 707 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 NKTRP30414 1462 aaKnown RBP10.11□□□□□ -0.79
RTN3-202ENST00000339997 TIAM1Q13009 1591 aa10.11□□□□□ -0.79
RTN3-202ENST00000339997 NAIPQ13075 1403 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 MACROD2A1Z1Q3 448 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 SLC3A2P08195 630 aaKnown RBP10.1□□□□□ -0.79
RTN3-202ENST00000339997 U2AF2P26368 475 aaKnown RBP eCLIP10.1□□□□□ -0.793e-6■■■□□ 15.2
RTN3-202ENST00000339997 CABP4P57796 275 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 CCDC12Q8WUD4 166 aaPredicted RBP10.1□□□□□ -0.79
RTN3-202ENST00000339997 RSPH14Q9UHP6 348 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 FANCD2Q9BXW9 1451 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 ATP5J2-PTCD1G3V325 749 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 LMOD1P29536 600 aaPredicted RBP10.1□□□□□ -0.79
RTN3-202ENST00000339997 SEPT7Q16181 437 aaKnown RBP10.1□□□□□ -0.79
RTN3-202ENST00000339997 DNAJC21Q5F1R6 531 aaKnown RBP10.1□□□□□ -0.79
RTN3-202ENST00000339997 CHST3Q7LGC8 479 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 MICU3Q86XE3 530 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 BRF1Q92994 677 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 SMARCC1Q92922 1105 aaPredicted RBP10.1□□□□□ -0.79
RTN3-202ENST00000339997 CALCOCO1Q9P1Z2 691 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 SPECC1Q5M775 1068 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 GTF3C6Q969F1 213 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.1□□□□□ -0.79
RTN3-202ENST00000339997 DACH1Q9UI36 760 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 PTPRKQ15262 1439 aa10.1□□□□□ -0.79
RTN3-202ENST00000339997 MNAT1P51948 309 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 HLTFQ14527 1009 aaKnown RBP eCLIP10.09□□□□□ -0.79
RTN3-202ENST00000339997 TMEM132AQ24JP5 1023 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 FKBP15Q5T1M5 1219 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 GIMAP7Q8NHV1 300 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 AIDAQ96BJ3 306 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 MYD88Q99836 296 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 NACAP1Q9BZK3 213 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 RABEP2Q9H5N1 569 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 GOPCQ9HD26 462 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 MARCKSP29966 332 aaPredicted RBP10.09□□□□□ -0.79
RTN3-202ENST00000339997 PIP4K2AP48426 406 aaPredicted RBP10.09□□□□□ -0.79
RTN3-202ENST00000339997 PPP1R42Q7Z4L9 355 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 LUZP1Q86V48 1076 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 GOLGA8BA8MQT2 603 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 GOLIM4O00461 696 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 ZSCAN12O43309 604 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 IMMTQ16891 758 aaKnown RBP10.09□□□□□ -0.79
RTN3-202ENST00000339997 DDX46Q7L014 1031 aaKnown RBP10.09□□□□□ -0.79
RTN3-202ENST00000339997 DYDC1Q8WWB3 177 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 UBA5Q9GZZ9 404 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 RBSNQ9H1K0 784 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 MBIPQ9NS73 344 aa10.09□□□□□ -0.79
RTN3-202ENST00000339997 TDRD12Q587J7 1177 aaKnown RBP10.08□□□□□ -0.8
RTN3-202ENST00000339997 SPTY2D1Q68D10 685 aaPredicted RBP10.08□□□□□ -0.8
RTN3-202ENST00000339997 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.08□□□□□ -0.86e-7■■■□□ 14.6
RTN3-202ENST00000339997 MAP3K1Q13233 1512 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 ERLIN2O94905 339 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 UBE2HP62256 183 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 TTC22Q5TAA0 569 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 MYO1BO43795 1136 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 FLIIQ13045 1269 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 KRT32Q14532 448 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms