RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 ITGB4P16144 1822 aa18.6■□□□□ 0.57
CBX3-201ENST00000337620 C5P01031 1676 aa18.6■□□□□ 0.57
CBX3-201ENST00000337620 PROSER3Q2NL68 480 aa18.6■□□□□ 0.57
CBX3-201ENST00000337620 INTS3Q68E01 1043 aaKnown RBP18.6■□□□□ 0.57
CBX3-201ENST00000337620 ZBTB7BO15156 539 aaPredicted RBP18.59■□□□□ 0.57
CBX3-201ENST00000337620 ATG3Q9NT62 314 aa18.59■□□□□ 0.57
CBX3-201ENST00000337620 ZBTB40Q9NUA8 1239 aa18.59■□□□□ 0.57
CBX3-201ENST00000337620 PCDHB15Q9Y5E8 787 aa18.59■□□□□ 0.57
CBX3-201ENST00000337620 BCL9O00512 1426 aa18.59■□□□□ 0.57
CBX3-201ENST00000337620 CHMP4BQ9H444 224 aaKnown RBP18.59■□□□□ 0.57
CBX3-201ENST00000337620 DDX21Q9NR30 783 aaKnown RBP eCLIP18.59■□□□□ 0.57
CBX3-201ENST00000337620 HYPKQ9NX55 129 aa18.59■□□□□ 0.57
CBX3-201ENST00000337620 QTRT2Q9H974 415 aaKnown RBP18.58■□□□□ 0.57
CBX3-201ENST00000337620 PAPPAQ13219 1627 aa18.58■□□□□ 0.57
CBX3-201ENST00000337620 KCPQ6ZWJ8 1503 aa18.58■□□□□ 0.57
CBX3-201ENST00000337620 MYL6BP14649 208 aa18.58■□□□□ 0.56
CBX3-201ENST00000337620 PDIA6Q15084 440 aa18.58■□□□□ 0.56
CBX3-201ENST00000337620 ATRNO75882 1429 aa18.57■□□□□ 0.56
CBX3-201ENST00000337620 UBR2Q8IWV8 1755 aa18.57■□□□□ 0.56
CBX3-201ENST00000337620 RBM42Q9BTD8 480 aaKnown RBP18.57■□□□□ 0.56
CBX3-201ENST00000337620 DOT1LQ8TEK3 1739 aa18.57■□□□□ 0.56
CBX3-201ENST00000337620 GLI3P10071 1580 aa18.56■□□□□ 0.56
CBX3-201ENST00000337620 CCT4P50991 539 aaKnown RBP18.56■□□□□ 0.56
CBX3-201ENST00000337620 IGHDP01880 384 aa18.56■□□□□ 0.56
CBX3-201ENST00000337620 PIP4K2AP48426 406 aaPredicted RBP18.56■□□□□ 0.56
CBX3-201ENST00000337620 CENPQQ7L2Z9 268 aaPredicted RBP18.56■□□□□ 0.56
CBX3-201ENST00000337620 PI4KAP2A4QPH2 592 aa18.55■□□□□ 0.56
CBX3-201ENST00000337620 AIMP1Q12904 312 aaKnown RBP18.55■□□□□ 0.56
CBX3-201ENST00000337620 PI4KAP1Q8N8J0 262 aa18.55■□□□□ 0.56
CBX3-201ENST00000337620 KDM2BQ8NHM5 1336 aa18.55■□□□□ 0.56
CBX3-201ENST00000337620 C1orf115Q9H7X2 142 aa18.53■□□□□ 0.56
CBX3-201ENST00000337620 THSD7AQ9UPZ6 1657 aa18.53■□□□□ 0.56
CBX3-201ENST00000337620 DNAAF4Q8WXU2 420 aa18.53■□□□□ 0.56
CBX3-201ENST00000337620 KCNQ2O43526 872 aa18.52■□□□□ 0.56
CBX3-201ENST00000337620 DDX58O95786 925 aaKnown RBP18.52■□□□□ 0.56
CBX3-201ENST00000337620 VSIG10Q8N0Z9 540 aa18.52■□□□□ 0.56
CBX3-201ENST00000337620 RWDD1Q9H446 243 aaPredicted RBP18.52■□□□□ 0.56
CBX3-201ENST00000337620 ONECUT3O60422 494 aaPredicted RBP18.52■□□□□ 0.55
CBX3-201ENST00000337620 A1BGP04217 495 aa18.52■□□□□ 0.55
CBX3-201ENST00000337620 KSR2Q6VAB6 950 aa18.52■□□□□ 0.55
CBX3-201ENST00000337620 COPS6Q7L5N1 327 aa18.52■□□□□ 0.55
CBX3-201ENST00000337620 DNAJC10Q8IXB1 793 aa18.52■□□□□ 0.55
CBX3-201ENST00000337620 SEPT12Q8IYM1 358 aa18.52■□□□□ 0.55
CBX3-201ENST00000337620 XAGE3Q8WTP9 111 aa18.52■□□□□ 0.55
CBX3-201ENST00000337620 TEX13AQ9BXU3 409 aaPredicted RBP18.52■□□□□ 0.55
CBX3-201ENST00000337620 LAMB4A4D0S4 1761 aa18.52■□□□□ 0.55
CBX3-201ENST00000337620 ADCY9O60503 1353 aa18.51■□□□□ 0.55
CBX3-201ENST00000337620 FAM182BQ5T319 152 aa18.51■□□□□ 0.55
CBX3-201ENST00000337620 MEIS3Q99687 375 aa18.51■□□□□ 0.55
CBX3-201ENST00000337620 MAP3K2Q9Y2U5 619 aa18.51■□□□□ 0.55
CBX3-201ENST00000337620 ERBB4Q15303 1308 aa18.5■□□□□ 0.55
CBX3-201ENST00000337620 NBPF26B4DH59 902 aa18.5■□□□□ 0.55
CBX3-201ENST00000337620 NBPF14Q5TI25 921 aa18.5■□□□□ 0.55
CBX3-201ENST00000337620 NBPF10Q6P3W6 841 aaKnown RBP18.5■□□□□ 0.55
CBX3-201ENST00000337620 NBPF15Q8N660 670 aa18.5■□□□□ 0.55
CBX3-201ENST00000337620 SRCIN1Q9C0H9 1055 aa18.5■□□□□ 0.55
CBX3-201ENST00000337620 LRP10Q7Z4F1 713 aa18.49■□□□□ 0.55
CBX3-201ENST00000337620 RIC3Q7Z5B4 369 aa18.49■□□□□ 0.55
CBX3-201ENST00000337620 SLC4A9Q96Q91 983 aa18.49■□□□□ 0.55
CBX3-201ENST00000337620 PXDNLA1KZ92 1463 aa18.49■□□□□ 0.55
CBX3-201ENST00000337620 STARD3NLO95772 234 aa18.49■□□□□ 0.55
CBX3-201ENST00000337620 BEND3Q5T5X7 828 aa18.48■□□□□ 0.55
CBX3-201ENST00000337620 HDAC1Q13547 482 aaPredicted RBP18.47■□□□□ 0.55
CBX3-201ENST00000337620 ZNF772Q68DY9 489 aaPredicted RBP18.47■□□□□ 0.55
CBX3-201ENST00000337620 FBXO41Q8TF61 875 aa18.47■□□□□ 0.55
CBX3-201ENST00000337620 ANKRD13DQ6ZTN6 518 aa18.47■□□□□ 0.55
CBX3-201ENST00000337620 GNAI3P08754 354 aa18.46■□□□□ 0.55
CBX3-201ENST00000337620 SMARCC1Q92922 1105 aaPredicted RBP18.46■□□□□ 0.55
CBX3-201ENST00000337620 ZNF330Q9Y3S2 320 aaPredicted RBP18.46■□□□□ 0.55
CBX3-201ENST00000337620 SKAP1Q86WV1 359 aa18.45■□□□□ 0.54
CBX3-201ENST00000337620 CYP19A1P11511 503 aaPredicted RBP18.44■□□□□ 0.54
CBX3-201ENST00000337620 ATP6V1AP38606 617 aa18.44■□□□□ 0.54
CBX3-201ENST00000337620 PTF1AQ7RTS3 328 aa18.44■□□□□ 0.54
CBX3-201ENST00000337620 USP44Q9H0E7 712 aa18.44■□□□□ 0.54
CBX3-201ENST00000337620 PALLDQ8WX93 1383 aa18.44■□□□□ 0.54
CBX3-201ENST00000337620 ATP10DQ9P241 1426 aa18.44■□□□□ 0.54
CBX3-201ENST00000337620 LOC102724428A0A0B4J2F2 783 aa18.44■□□□□ 0.54
CBX3-201ENST00000337620 GNAI2P04899 355 aa18.44■□□□□ 0.54
CBX3-201ENST00000337620 SIK1P57059 783 aa18.44■□□□□ 0.54
CBX3-201ENST00000337620 NEXNQ0ZGT2 675 aa18.43■□□□□ 0.54
CBX3-201ENST00000337620 CWF19L2Q2TBE0 894 aaKnown RBP18.43■□□□□ 0.54
CBX3-201ENST00000337620 TTLL7Q6ZT98 887 aa18.43■□□□□ 0.54
CBX3-201ENST00000337620 SIRT2Q8IXJ6 389 aa18.43■□□□□ 0.54
CBX3-201ENST00000337620 N4BP2Q86UW6 1770 aaPredicted RBP18.43■□□□□ 0.54
CBX3-201ENST00000337620 UBTFL1P0CB47 393 aaPredicted RBP18.43■□□□□ 0.54
CBX3-201ENST00000337620 LINS1Q8NG48 757 aa18.43■□□□□ 0.54
CBX3-201ENST00000337620 METTL22Q9BUU2 404 aaPredicted RBP18.43■□□□□ 0.54
CBX3-201ENST00000337620 ALDH1L1O75891 902 aa18.42■□□□□ 0.54
CBX3-201ENST00000337620 RBM6P78332 1123 aaKnown RBP18.42■□□□□ 0.54
CBX3-201ENST00000337620 PLBD2Q8NHP8 589 aa18.42■□□□□ 0.54
CBX3-201ENST00000337620 MYD88Q99836 296 aa18.42■□□□□ 0.54
CBX3-201ENST00000337620 CEP85Q6P2H3 762 aa18.41■□□□□ 0.54
CBX3-201ENST00000337620 RPAP2Q8IXW5 612 aaPredicted RBP18.41■□□□□ 0.54
CBX3-201ENST00000337620 ANKRD44Q8N8A2 993 aa18.41■□□□□ 0.54
CBX3-201ENST00000337620 ARXQ96QS3 562 aa18.41■□□□□ 0.54
CBX3-201ENST00000337620 C9orf78Q9NZ63 289 aaPredicted RBP18.41■□□□□ 0.54
CBX3-201ENST00000337620 KRT27Q7Z3Y8 459 aa18.4■□□□□ 0.54
CBX3-201ENST00000337620 ZBTB1Q9Y2K1 713 aa18.4■□□□□ 0.54
CBX3-201ENST00000337620 LRRFIP2Q9Y608 721 aaKnown RBP18.4■□□□□ 0.54
CBX3-201ENST00000337620 IGKV5-2P06315 115 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 211.5 ms