RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ZNF335Q9H4Z2 1342 aaPredicted RBP8.24□□□□□ -1.09
SF3B1-201ENST00000335508 TRIM35Q9UPQ4 493 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 RNF123Q5XPI4 1314 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 ZFYP08048 801 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-201ENST00000335508 ZBTB40Q9NUA8 1239 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 FBXO3Q9UK99 471 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 MAP3K4Q9Y6R4 1608 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 BRPF1P55201 1214 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-201ENST00000335508 TRIM29Q14134 588 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 INO80Q9ULG1 1556 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-201ENST00000335508 CAVIN4Q5BKX8 364 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 CCDC191Q8NCU4 936 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 RHPN1Q8TCX5 695 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 TRIM34Q9BYJ4 488 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 SLC52A2Q9HAB3 445 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 ZNF287Q9HBT7 754 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 PHF14O94880 888 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 UQCRFS1P1P0C7P4 283 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 SLC39A6Q13433 755 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 SMC3Q9UQE7 1217 aa8.23□□□□□ -1.09
SF3B1-201ENST00000335508 XBP1P17861 261 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 CHPF2Q9P2E5 772 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.22□□□□□ -1.09
SF3B1-201ENST00000335508 ZNF521Q96K83 1311 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 ADGRB3O60242 1522 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 DCAF8L1A6NGE4 600 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 BCL11BQ9C0K0 894 aaPredicted RBP8.22□□□□□ -1.09
SF3B1-201ENST00000335508 MAP3K2Q9Y2U5 619 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 PTMAP06454 111 aaKnown RBP8.22□□□□□ -1.09
SF3B1-201ENST00000335508 MAP3K12Q12852 859 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 C20orf194Q5TEA3 1177 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 BLOC1S2Q6QNY1 142 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 MEIS3Q99687 375 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 ADAMTS13Q76LX8 1427 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 TRPC5Q9UL62 973 aaPredicted RBP8.22□□□□□ -1.09
SF3B1-201ENST00000335508 H3BQV1 296 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 IFFO2Q5TF58 517 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 LMBR1LQ6UX01 489 aa8.22□□□□□ -1.09
SF3B1-201ENST00000335508 ZSCAN31Q96LW9 406 aaPredicted RBP8.22□□□□□ -1.09
SF3B1-201ENST00000335508 U3KPZ7 1027 aaPredicted RBP8.22□□□□□ -1.09
SF3B1-201ENST00000335508 DDX46Q7L014 1031 aaKnown RBP8.21□□□□□ -1.09
SF3B1-201ENST00000335508 RTCBQ9Y3I0 505 aaKnown RBP8.21□□□□□ -1.09
SF3B1-201ENST00000335508 CYP46A1Q9Y6A2 500 aa8.21□□□□□ -1.09
SF3B1-201ENST00000335508 SLF2Q8IX21 1173 aa8.21□□□□□ -1.09
SF3B1-201ENST00000335508 IL17REQ8NFR9 667 aa8.21□□□□□ -1.09
SF3B1-201ENST00000335508 SIL1Q9H173 461 aa8.21□□□□□ -1.09
SF3B1-201ENST00000335508 RIMBP3CA6NJZ7 1639 aa8.21□□□□□ -1.09
SF3B1-201ENST00000335508 RIMBP3BA6NNM3 1639 aa8.21□□□□□ -1.09
SF3B1-201ENST00000335508 RIMBP3Q9UFD9 1639 aa8.21□□□□□ -1.09
SF3B1-201ENST00000335508 GIGYF1O75420 1035 aaPredicted RBP8.21□□□□□ -1.1
SF3B1-201ENST00000335508 PHKG2P15735 406 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 CCDC152Q4G0S7 254 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 TSPYL6Q8N831 410 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 PLBD2Q8NHP8 589 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 TMOD2Q9NZR1 351 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 BLMP54132 1417 aaPredicted RBP8.21□□□□□ -1.1
SF3B1-201ENST00000335508 ANXA1P04083 346 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 RFC4P35249 363 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 EIF4A1P60842 406 aaKnown RBP8.21□□□□□ -1.1
SF3B1-201ENST00000335508 FLAD1Q8NFF5 587 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 ARHGEF40Q8TER5 1519 aa8.21□□□□□ -1.1
SF3B1-201ENST00000335508 NBPF5PQ86XG9 351 aaPredicted RBP8.21□□□□□ -1.1
SF3B1-201ENST00000335508 DNAJC2Q99543 621 aaKnown RBP8.21□□□□□ -1.1
SF3B1-201ENST00000335508 TTC39AQ5SRH9 613 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 VSIG10Q8N0Z9 540 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 NYXQ9GZU5 481 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 DIP2BQ9P265 1576 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 PNPLA6Q8IY17 1366 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 SLC5A1P13866 664 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 TTF1Q15361 905 aaPredicted RBP8.2□□□□□ -1.1
SF3B1-201ENST00000335508 MED14O60244 1454 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 CWC22Q9HCG8 908 aaKnown RBP8.2□□□□□ -1.1
SF3B1-201ENST00000335508 LRP2BPQ9P2M1 347 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 CDK12Q9NYV4 1490 aaPredicted RBP8.2□□□□□ -1.1
SF3B1-201ENST00000335508 PCDHB15Q9Y5E8 787 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 MBD3O95983 291 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 ATP6V1AP38606 617 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 NBPF14Q5TI25 921 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 SETDB2Q96T68 719 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 EVI5LQ96CN4 794 aa8.2□□□□□ -1.1
SF3B1-201ENST00000335508 TTC41PQ6P2S7 1318 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 ZNF853P0CG23 659 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 DEKP35659 375 aaKnown RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 ATP5J2-PTCD1G3V325 749 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 EPB41L2O43491 1005 aaKnown RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 HMGB1P09429 215 aaKnown RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 ATP2B3Q16720 1220 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 RNF41Q9H4P4 317 aaPredicted RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 PTPRUQ92729 1446 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 DLC1Q96QB1 1528 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 GPTP24298 496 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 DZIP3Q86Y13 1208 aaKnown RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 TRIM22Q8IYM9 498 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 TRMT2AQ8IZ69 625 aaKnown RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 IDH1O75874 414 aaKnown RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 DNAJC10Q8IXB1 793 aa8.19□□□□□ -1.1
SF3B1-201ENST00000335508 SPINK5Q9NQ38 1064 aaPredicted RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 THRAP3Q9Y2W1 955 aaKnown RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 DDX49Q9Y6V7 483 aaKnown RBP8.19□□□□□ -1.1
SF3B1-201ENST00000335508 AIDAQ96BJ3 306 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms