RNA–Protein interactions for RNA: ENST00000323959.8

CSTF3-201, Transcript of cleavage stimulation factor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF3, Length 2,797 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-201ENST00000323959 ERBB4Q15303 1308 aa9.81□□□□□ -0.84
CSTF3-201ENST00000323959 LAMB4A4D0S4 1761 aa9.81□□□□□ -0.84
CSTF3-201ENST00000323959 SYNGAP1Q96PV0 1343 aa9.8□□□□□ -0.84
CSTF3-201ENST00000323959 SAPCD2Q86UD0 394 aa9.8□□□□□ -0.84
CSTF3-201ENST00000323959 ARFGEF2Q9Y6D5 1785 aa9.8□□□□□ -0.84
CSTF3-201ENST00000323959 MAP3K19Q56UN5 1328 aa9.8□□□□□ -0.84
CSTF3-201ENST00000323959 COL5A3P25940 1745 aaPredicted RBP9.79□□□□□ -0.84
CSTF3-201ENST00000323959 CST9Q5W186 159 aa9.79□□□□□ -0.84
CSTF3-201ENST00000323959 LOC102724428A0A0B4J2F2 783 aa9.79□□□□□ -0.84
CSTF3-201ENST00000323959 SIK1P57059 783 aa9.79□□□□□ -0.84
CSTF3-201ENST00000323959 BCORQ6W2J9 1755 aa9.79□□□□□ -0.84
CSTF3-201ENST00000323959 PAPPA2Q9BXP8 1791 aa9.79□□□□□ -0.84
CSTF3-201ENST00000323959 CD163L1Q9NR16 1453 aa9.78□□□□□ -0.84
CSTF3-201ENST00000323959 SOGA3Q5TF21 947 aa9.78□□□□□ -0.84
CSTF3-201ENST00000323959 TAOK3Q9H2K8 898 aa9.78□□□□□ -0.84
CSTF3-201ENST00000323959 APLP2Q06481 763 aa9.78□□□□□ -0.84
CSTF3-201ENST00000323959 NOM1Q5C9Z4 860 aaKnown RBP9.78□□□□□ -0.84
CSTF3-201ENST00000323959 CNTNAP4Q9C0A0 1308 aa9.78□□□□□ -0.84
CSTF3-201ENST00000323959 RFC4P35249 363 aa9.77□□□□□ -0.84
CSTF3-201ENST00000323959 ARIH1Q9Y4X5 557 aaPredicted RBP9.77□□□□□ -0.84
CSTF3-201ENST00000323959 DDR1Q08345 913 aa9.77□□□□□ -0.85
CSTF3-201ENST00000323959 RNF186Q9NXI6 227 aa9.77□□□□□ -0.85
CSTF3-201ENST00000323959 TRIM26Q12899 539 aaPredicted RBP9.76□□□□□ -0.85
CSTF3-201ENST00000323959 ARHGEF1Q92888 912 aaKnown RBP9.76□□□□□ -0.85
CSTF3-201ENST00000323959 TTC21BQ7Z4L5 1316 aa9.76□□□□□ -0.85
CSTF3-201ENST00000323959 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.76□□□□□ -0.85
CSTF3-201ENST00000323959 AFDNP55196 1824 aaKnown RBP9.75□□□□□ -0.85
CSTF3-201ENST00000323959 FMR1Q06787 632 aaKnown RBP eCLIP9.75□□□□□ -0.85
CSTF3-201ENST00000323959 RPS6KA4O75676 772 aa9.75□□□□□ -0.85
CSTF3-201ENST00000323959 POLRMTO00411 1230 aaKnown RBP9.75□□□□□ -0.85
CSTF3-201ENST00000323959 ITPK1Q13572 414 aa9.75□□□□□ -0.85
CSTF3-201ENST00000323959 HDAC9Q9UKV0 1011 aa9.75□□□□□ -0.85
CSTF3-201ENST00000323959 PCDH11XQ9BZA7 1347 aa9.74□□□□□ -0.85
CSTF3-201ENST00000323959 PCDH11YQ9BZA8 1340 aa9.74□□□□□ -0.85
CSTF3-201ENST00000323959 H0YGN5 161 aa9.74□□□□□ -0.85
CSTF3-201ENST00000323959 ZNF692Q9BU19 519 aaPredicted RBP9.74□□□□□ -0.85
CSTF3-201ENST00000323959 PRO3102Q9H379 93 aa9.74□□□□□ -0.85
CSTF3-201ENST00000323959 CHRDL2Q6WN34 429 aa9.74□□□□□ -0.85
CSTF3-201ENST00000323959 USP50Q70EL3 339 aaPredicted RBP9.74□□□□□ -0.85
CSTF3-201ENST00000323959 C2CD5Q86YS7 1000 aa9.74□□□□□ -0.85
CSTF3-201ENST00000323959 KDRP35968 1356 aa9.74□□□□□ -0.85
CSTF3-201ENST00000323959 CCDC102AQ96A19 550 aa9.73□□□□□ -0.85
CSTF3-201ENST00000323959 SLC4A1APQ9BWU0 796 aaKnown RBP9.73□□□□□ -0.85
CSTF3-201ENST00000323959 H0YIN7 160 aa9.73□□□□□ -0.85
CSTF3-201ENST00000323959 TM4SF1P30408 202 aa9.73□□□□□ -0.85
CSTF3-201ENST00000323959 MPRIPQ6WCQ1 1025 aa9.73□□□□□ -0.85
CSTF3-201ENST00000323959 RBM27Q9P2N5 1060 aaKnown RBP9.73□□□□□ -0.85
CSTF3-201ENST00000323959 USP42Q9H9J4 1324 aaKnown RBP9.72□□□□□ -0.85
CSTF3-201ENST00000323959 GPC2Q8N158 579 aa9.72□□□□□ -0.85
CSTF3-201ENST00000323959 ZNF541Q9H0D2 1346 aa9.71□□□□□ -0.85
CSTF3-201ENST00000323959 PPEF1O14829 653 aaPredicted RBP9.71□□□□□ -0.85
CSTF3-201ENST00000323959 CELF2O95319 508 aaKnown RBP9.71□□□□□ -0.85
CSTF3-201ENST00000323959 ATP6V1AP38606 617 aa9.71□□□□□ -0.85
CSTF3-201ENST00000323959 MON2Q7Z3U7 1717 aa9.71□□□□□ -0.85
CSTF3-201ENST00000323959 SYMPKQ92797 1274 aaKnown RBP9.71□□□□□ -0.86
CSTF3-201ENST00000323959 STAC3Q96MF2 364 aa9.71□□□□□ -0.86
CSTF3-201ENST00000323959 POTEFA5A3E0 1075 aa9.7□□□□□ -0.86
CSTF3-201ENST00000323959 TRPA1O75762 1119 aa9.7□□□□□ -0.86
CSTF3-201ENST00000323959 LMOD1P29536 600 aaPredicted RBP9.7□□□□□ -0.86
CSTF3-201ENST00000323959 BICDL1Q6ZP65 573 aa9.7□□□□□ -0.86
CSTF3-201ENST00000323959 IP6K1Q92551 441 aa9.7□□□□□ -0.86
CSTF3-201ENST00000323959 FAM155AB1AL88 458 aaPredicted RBP9.69□□□□□ -0.86
CSTF3-201ENST00000323959 SOX12O15370 315 aa9.69□□□□□ -0.86
CSTF3-201ENST00000323959 SRPK2P78362 688 aaKnown RBP9.69□□□□□ -0.86
CSTF3-201ENST00000323959 KIF23Q02241 960 aaPredicted RBP9.69□□□□□ -0.86
CSTF3-201ENST00000323959 PIGBQ92521 554 aa9.69□□□□□ -0.86
CSTF3-201ENST00000323959 TRAF5O00463 557 aa9.69□□□□□ -0.86
CSTF3-201ENST00000323959 FKBP8Q14318 412 aa9.69□□□□□ -0.86
CSTF3-201ENST00000323959 RGMBQ6NW40 437 aa9.68□□□□□ -0.86
CSTF3-201ENST00000323959 COL11A2P13942 1736 aaPredicted RBP9.68□□□□□ -0.86
CSTF3-201ENST00000323959 RNF123Q5XPI4 1314 aa9.68□□□□□ -0.86
CSTF3-201ENST00000323959 ZIC5Q96T25 663 aa9.68□□□□□ -0.86
CSTF3-201ENST00000323959 C21orf2O43822 256 aa9.67□□□□□ -0.86
CSTF3-201ENST00000323959 NKX1-1Q15270 411 aaPredicted RBP9.67□□□□□ -0.86
CSTF3-201ENST00000323959 RGPD2P0DJD1 1756 aa9.67□□□□□ -0.86
CSTF3-201ENST00000323959 FZD9O00144 591 aa9.67□□□□□ -0.86
CSTF3-201ENST00000323959 CABP1Q9NZU7 370 aa9.67□□□□□ -0.86
CSTF3-201ENST00000323959 TRIOBPQ9H2D6 2365 aa9.66□□□□□ -0.86
CSTF3-201ENST00000323959 ARMC5Q96C12 935 aa9.66□□□□□ -0.86
CSTF3-201ENST00000323959 ANKRD31Q8N7Z5 1873 aa9.66□□□□□ -0.86
CSTF3-201ENST00000323959 TATP17735 454 aaPredicted RBP9.66□□□□□ -0.86
CSTF3-201ENST00000323959 CNKSR1Q969H4 720 aa9.66□□□□□ -0.86
CSTF3-201ENST00000323959 PGAP2Q9UHJ9 254 aa9.66□□□□□ -0.86
CSTF3-201ENST00000323959 ZNF296Q8WUU4 475 aaPredicted RBP9.65□□□□□ -0.86
CSTF3-201ENST00000323959 RAPGEF4Q8WZA2 1011 aa9.65□□□□□ -0.86
CSTF3-201ENST00000323959 SLC10A3P09131 477 aa9.64□□□□□ -0.87
CSTF3-201ENST00000323959 HUNKP57058 714 aa9.64□□□□□ -0.87
CSTF3-201ENST00000323959 FKBP4Q02790 459 aaKnown RBP eCLIP9.64□□□□□ -0.87
CSTF3-201ENST00000323959 STYK1Q6J9G0 422 aa9.64□□□□□ -0.87
CSTF3-201ENST00000323959 CCDC24Q8N4L8 307 aa9.64□□□□□ -0.87
CSTF3-201ENST00000323959 PDE6BP35913 854 aa9.64□□□□□ -0.87
CSTF3-201ENST00000323959 CFHR5Q9BXR6 569 aa9.64□□□□□ -0.87
CSTF3-201ENST00000323959 CCDC93Q567U6 631 aa9.63□□□□□ -0.87
CSTF3-201ENST00000323959 TMOD3Q9NYL9 352 aa9.63□□□□□ -0.87
CSTF3-201ENST00000323959 ZC3H15Q8WU90 426 aaKnown RBP9.63□□□□□ -0.87
CSTF3-201ENST00000323959 CSRNP1Q96S65 589 aa9.63□□□□□ -0.87
CSTF3-201ENST00000323959 RTL1A6NKG5 1358 aa9.63□□□□□ -0.87
CSTF3-201ENST00000323959 SOX1O00570 391 aaPredicted RBP9.63□□□□□ -0.87
CSTF3-201ENST00000323959 EN2P19622 333 aaPredicted RBP9.63□□□□□ -0.87
CSTF3-201ENST00000323959 SYNE4Q8N205 404 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms