RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 FSIP1Q8NA03 581 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 ZNF165P49910 485 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 WWC2Q6AWC2 1192 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 CCDC82Q8N4S0 544 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 VPS36Q86VN1 386 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 CFAP65Q6ZU64 1925 aaKnown RBP10.08□□□□□ -0.8
USF3-201ENST00000316407 CTAGE9A4FU28 777 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 BAG4O95429 457 aaKnown RBP10.08□□□□□ -0.8
USF3-201ENST00000316407 C17orf53Q8N3J3 647 aaPredicted RBP10.08□□□□□ -0.8
USF3-201ENST00000316407 NOL7Q9UMY1 257 aaKnown RBP10.08□□□□□ -0.8
USF3-201ENST00000316407 CTNNA2P26232 953 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.08□□□□□ -0.8
USF3-201ENST00000316407 YEATS4O95619 227 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 TMEM57Q8N5G2 664 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 CNNM1Q9NRU3 951 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 EBAG9O00559 213 aa10.07□□□□□ -0.8
USF3-201ENST00000316407 HGSO14964 777 aaPredicted RBP10.07□□□□□ -0.8
USF3-201ENST00000316407 CNPY2Q9Y2B0 182 aa10.07□□□□□ -0.8
USF3-201ENST00000316407 NOP2P46087 812 aaKnown RBP10.07□□□□□ -0.8
USF3-201ENST00000316407 USO1O60763 962 aaKnown RBP10.07□□□□□ -0.8
USF3-201ENST00000316407 HPDP32754 393 aaPredicted RBP10.07□□□□□ -0.8
USF3-201ENST00000316407 SMAP1Q8IYB5 467 aaPredicted RBP10.07□□□□□ -0.8
USF3-201ENST00000316407 EXOC6BQ9Y2D4 811 aa10.07□□□□□ -0.8
USF3-201ENST00000316407 TFIP11Q9UBB9 837 aaKnown RBP10.07□□□□□ -0.8
USF3-201ENST00000316407 SELENOSQ9BQE4 189 aa10.07□□□□□ -0.8
USF3-201ENST00000316407 U2AF2P26368 475 aaKnown RBP eCLIP10.07□□□□□ -0.8
USF3-201ENST00000316407 PPP1R12CQ9BZL4 782 aa10.07□□□□□ -0.8
USF3-201ENST00000316407 SRGAP3O43295 1099 aa10.07□□□□□ -0.8
USF3-201ENST00000316407 SCAND2PQ9GZW5 306 aaPredicted RBP10.07□□□□□ -0.8
USF3-201ENST00000316407 NEMFO60524 1076 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 TAOK3Q9H2K8 898 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 PPP2R1AP30153 589 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 SOGA3Q5TF21 947 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 PSMC4P43686 418 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 GJB2P29033 226 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 FRMD3A2A2Y4 597 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 ERCC3P19447 782 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 IFT81Q8WYA0 676 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 EID1Q9Y6B2 187 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 CECR2Q9BXF3 1484 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 FLIIQ13045 1269 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 HOMER2Q9NSB8 354 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 CWC25Q9NXE8 425 aaPredicted RBP10.06□□□□□ -0.8
USF3-201ENST00000316407 PPP1R12BO60237 982 aaPredicted RBP10.06□□□□□ -0.8
USF3-201ENST00000316407 CCT2P78371 535 aaKnown RBP10.06□□□□□ -0.8
USF3-201ENST00000316407 SEPT14Q6ZU15 432 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 NSRP1Q9H0G5 558 aaKnown RBP10.06□□□□□ -0.8
USF3-201ENST00000316407 POLR3DP05423 398 aaPredicted RBP10.06□□□□□ -0.8
USF3-201ENST00000316407 USP5P45974 858 aa10.06□□□□□ -0.8
USF3-201ENST00000316407 TSHZ3Q63HK5 1081 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 MIA2Q96PC5 1412 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 MYL6BP14649 208 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 CCDC144CPQ8IYA2 1237 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 NAA15Q9BXJ9 866 aaKnown RBP10.05□□□□□ -0.8
USF3-201ENST00000316407 FSD2A1L4K1 749 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 KIF5BP33176 963 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 CNNM3Q8NE01 707 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 STX6O43752 255 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.05□□□□□ -0.8
USF3-201ENST00000316407 MPHOSPH10O00566 681 aaKnown RBP10.05□□□□□ -0.8
USF3-201ENST00000316407 KLHL34Q8N239 644 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 IKBKGQ9Y6K9 419 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 ZSCAN31Q96LW9 406 aaPredicted RBP10.05□□□□□ -0.8
USF3-201ENST00000316407 ZBTB16Q05516 673 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 SF3A3Q12874 501 aaKnown RBP eCLIP10.05□□□□□ -0.8
USF3-201ENST00000316407 CPLX4Q7Z7G2 160 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 FAM114A1Q8IWE2 563 aa10.05□□□□□ -0.8
USF3-201ENST00000316407 C8orf76Q96K31 380 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 CCDC158Q5M9N0 1113 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 KIF3CO14782 793 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 ZNF76P36508 570 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 ZWINTO95229 277 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 CETN2P41208 172 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 NACAP1Q9BZK3 213 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 SYT1P21579 422 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 PRIM1P49642 420 aaKnown RBP10.04□□□□□ -0.8
USF3-201ENST00000316407 CCDC57Q2TAC2 916 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 LRSAM1Q6UWE0 723 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 CCDC150Q8NCX0 1101 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 KLHL40Q2TBA0 621 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 KRT13P13646 458 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 CCDC186Q7Z3E2 898 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 UBE2HP62256 183 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 PUF60Q9UHX1 559 aaKnown RBP10.04□□□□□ -0.8
USF3-201ENST00000316407 NBPF11Q86T75 865 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 GOLGA1Q92805 767 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 OGFRQ9NZT2 677 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 FAM76AQ8TAV0 307 aa10.04□□□□□ -0.8
USF3-201ENST00000316407 BMP2KQ9NSY1 1161 aaPredicted RBP10.04□□□□□ -0.8
USF3-201ENST00000316407 TBC1D9Q6ZT07 1266 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 PLEKHH1Q9ULM0 1364 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 RAB11FIP4Q86YS3 637 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 COMMD10Q9Y6G5 202 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 TRIM21P19474 475 aaKnown RBP10.03□□□□□ -0.8
USF3-201ENST00000316407 DIXDC1Q155Q3 683 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 RAB11FIP3O75154 756 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 NKTRP30414 1462 aaKnown RBP10.03□□□□□ -0.8
USF3-201ENST00000316407 SLU7O95391 586 aaKnown RBP10.03□□□□□ -0.8
USF3-201ENST00000316407 KARSQ15046 597 aaKnown RBP10.03□□□□□ -0.8
USF3-201ENST00000316407 RAB3IL1Q8TBN0 382 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms