RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 PDIA4P13667 645 aaKnown RBP13.24□□□□□ -0.29
LSM3-201ENST00000306024 DCAF5Q96JK2 942 aa13.24□□□□□ -0.29
LSM3-201ENST00000306024 CCDC94Q9BW85 323 aaPredicted RBP13.24□□□□□ -0.29
LSM3-201ENST00000306024 CHL1O00533 1208 aa13.24□□□□□ -0.29
LSM3-201ENST00000306024 FOXD4L5Q5VV16 416 aaPredicted RBP13.24□□□□□ -0.29
LSM3-201ENST00000306024 FOXD4L4Q8WXT5 416 aaPredicted RBP13.24□□□□□ -0.29
LSM3-201ENST00000306024 TOPAZ1Q8N9V7 1692 aa13.24□□□□□ -0.29
LSM3-201ENST00000306024 PCDH11XQ9BZA7 1347 aa13.24□□□□□ -0.29
LSM3-201ENST00000306024 PCDH11YQ9BZA8 1340 aa13.24□□□□□ -0.29
LSM3-201ENST00000306024 NAP1L2Q9ULW6 460 aaPredicted RBP13.24□□□□□ -0.29
LSM3-201ENST00000306024 VAMP4O75379 141 aa13.23□□□□□ -0.29
LSM3-201ENST00000306024 ALDH1L2Q3SY69 923 aa13.23□□□□□ -0.29
LSM3-201ENST00000306024 CGNQ9P2M7 1197 aaKnown RBP13.23□□□□□ -0.29
LSM3-201ENST00000306024 USP21Q9UK80 565 aa13.23□□□□□ -0.29
LSM3-201ENST00000306024 DDX19BQ9UMR2 479 aa13.23□□□□□ -0.29
LSM3-201ENST00000306024 PIK3C2AO00443 1686 aa13.23□□□□□ -0.29
LSM3-201ENST00000306024 HSPA1LP34931 641 aa13.23□□□□□ -0.29
LSM3-201ENST00000306024 PHKG2P15735 406 aa13.22□□□□□ -0.29
LSM3-201ENST00000306024 SSFA2P28290 1259 aa13.22□□□□□ -0.29
LSM3-201ENST00000306024 PPP4R3BQ5MIZ7 849 aa13.22□□□□□ -0.29
LSM3-201ENST00000306024 PHF23Q9BUL5 403 aaPredicted RBP13.22□□□□□ -0.29
LSM3-201ENST00000306024 ANKRD26Q9UPS8 1709 aa13.22□□□□□ -0.29
LSM3-201ENST00000306024 FAM98CQ17RN3 349 aaKnown RBP13.22□□□□□ -0.29
LSM3-201ENST00000306024 TRMT2AQ8IZ69 625 aaKnown RBP13.22□□□□□ -0.29
LSM3-201ENST00000306024 KDRP35968 1356 aa13.21□□□□□ -0.29
LSM3-201ENST00000306024 JCADQ9P266 1359 aa13.21□□□□□ -0.29
LSM3-201ENST00000306024 MYL6BP14649 208 aa13.21□□□□□ -0.29
LSM3-201ENST00000306024 HMGN5P82970 282 aaKnown RBP13.21□□□□□ -0.29
LSM3-201ENST00000306024 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.21□□□□□ -0.34e-7■■■□□ 14.8
LSM3-201ENST00000306024 CPDO75976 1380 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 SPDYE4A6NLX3 237 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 DDX58O95786 925 aaKnown RBP13.2□□□□□ -0.3
LSM3-201ENST00000306024 ZKSCAN5Q9Y2L8 839 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 STRCP1A6NGW2 1772 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 IGSF3O75054 1194 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 ACSBG1Q96GR2 724 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 FMNL2Q96PY5 1086 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 PRPF40AO75400 957 aaKnown RBP13.2□□□□□ -0.3
LSM3-201ENST00000306024 ANXA1P04083 346 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 PPP1R9BQ96SB3 815 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 PXDNQ92626 1479 aa13.2□□□□□ -0.3
LSM3-201ENST00000306024 TRIM27P14373 513 aa13.19□□□□□ -0.3
LSM3-201ENST00000306024 LNPKQ9C0E8 428 aa13.19□□□□□ -0.3
LSM3-201ENST00000306024 VGLL3A8MV65 326 aa13.19□□□□□ -0.3
LSM3-201ENST00000306024 DMTNQ08495 405 aa13.19□□□□□ -0.3
LSM3-201ENST00000306024 RIC3Q7Z5B4 369 aa13.19□□□□□ -0.3
LSM3-201ENST00000306024 PLCD3Q8N3E9 789 aa13.19□□□□□ -0.3
LSM3-201ENST00000306024 PCDHB15Q9Y5E8 787 aa13.19□□□□□ -0.3
LSM3-201ENST00000306024 KLHL40Q2TBA0 621 aa13.19□□□□□ -0.3
LSM3-201ENST00000306024 CDCA7Q9BWT1 371 aaPredicted RBP13.19□□□□□ -0.3
LSM3-201ENST00000306024 NOL7Q9UMY1 257 aaKnown RBP13.19□□□□□ -0.3
LSM3-201ENST00000306024 APBB1O00213 710 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 KCNQ3O43525 872 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 TMEM57Q8N5G2 664 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 SLC52A2Q9HAB3 445 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 K7ELQ4 463 aaPredicted RBP13.18□□□□□ -0.3
LSM3-201ENST00000306024 CYP27B1O15528 508 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 NUCB2P80303 420 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 NEXNQ0ZGT2 675 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 GTPBP4Q9BZE4 634 aaKnown RBP13.18□□□□□ -0.3
LSM3-201ENST00000306024 TNNQ9UQP3 1299 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 LETM1O95202 739 aaPredicted RBP13.18□□□□□ -0.3
LSM3-201ENST00000306024 KIF3AQ9Y496 699 aa13.18□□□□□ -0.3
LSM3-201ENST00000306024 MVPQ14764 893 aaKnown RBP13.17□□□□□ -0.3
LSM3-201ENST00000306024 PDCL2Q8N4E4 241 aa13.17□□□□□ -0.3
LSM3-201ENST00000306024 F6X3S4 739 aa13.17□□□□□ -0.3
LSM3-201ENST00000306024 ZNF853P0CG23 659 aa13.17□□□□□ -0.3
LSM3-201ENST00000306024 HS1BP3Q53T59 392 aa13.17□□□□□ -0.3
LSM3-201ENST00000306024 ZNF790Q6PG37 636 aa13.17□□□□□ -0.3
LSM3-201ENST00000306024 UNC5CLQ8IV45 518 aa13.17□□□□□ -0.3
LSM3-201ENST00000306024 SYAP1Q96A49 352 aaPredicted RBP13.17□□□□□ -0.3
LSM3-201ENST00000306024 KIF20AO95235 890 aa13.16□□□□□ -0.3
LSM3-201ENST00000306024 SNRPA1P09661 255 aaKnown RBP13.16□□□□□ -0.3
LSM3-201ENST00000306024 C9orf78Q9NZ63 289 aaPredicted RBP13.16□□□□□ -0.3
LSM3-201ENST00000306024 BAG4O95429 457 aaKnown RBP13.16□□□□□ -0.3
LSM3-201ENST00000306024 FLIIQ13045 1269 aa13.16□□□□□ -0.3
LSM3-201ENST00000306024 RAB3GAP1Q15042 981 aa13.16□□□□□ -0.3
LSM3-201ENST00000306024 MRPL50Q8N5N7 158 aaKnown RBP13.16□□□□□ -0.3
LSM3-201ENST00000306024 BABAM1Q9NWV8 329 aa13.16□□□□□ -0.3
LSM3-201ENST00000306024 DBF4Q9UBU7 674 aaPredicted RBP13.16□□□□□ -0.3
LSM3-201ENST00000306024 MCM5P33992 734 aa13.16□□□□□ -0.3
LSM3-201ENST00000306024 TSC1Q92574 1164 aa13.16□□□□□ -0.3
LSM3-201ENST00000306024 IQSEC2Q5JU85 1478 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 FOXD4L6Q3SYB3 417 aaPredicted RBP13.15□□□□□ -0.3
LSM3-201ENST00000306024 UTP14CQ5TAP6 766 aaKnown RBP13.15□□□□□ -0.3
LSM3-201ENST00000306024 FOXD4L3Q6VB84 417 aaPredicted RBP13.15□□□□□ -0.3
LSM3-201ENST00000306024 CHPF2Q9P2E5 772 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 FAM177BA6PVY3 158 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 NPHP1O15259 732 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 OS9Q13438 667 aaPredicted RBP13.15□□□□□ -0.3
LSM3-201ENST00000306024 TAF3Q5VWG9 929 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 C1orf115Q9H7X2 142 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 NRKQ7Z2Y5 1582 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 SYCE3A1L190 88 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 ZSCAN23Q3MJ62 389 aa13.15□□□□□ -0.3
LSM3-201ENST00000306024 CRB1P82279 1406 aa13.14□□□□□ -0.31
LSM3-201ENST00000306024 TNNT3P45378 269 aaPredicted RBP13.14□□□□□ -0.31
LSM3-201ENST00000306024 EIF4A1P60842 406 aaKnown RBP13.14□□□□□ -0.31
LSM3-201ENST00000306024 NFAT5O94916 1531 aa13.14□□□□□ -0.31
LSM3-201ENST00000306024 PRIM1P49642 420 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms