RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 SPG7Q9UQ90 795 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 NCOA2Q15596 1464 aa12.01□□□□□ -0.49
CLIP1-201ENST00000302528 TCERG1LQ5VWI1 586 aa12□□□□□ -0.49
CLIP1-201ENST00000302528 FERMT3Q86UX7 667 aa12□□□□□ -0.49
CLIP1-201ENST00000302528 EHMT1Q9H9B1 1298 aa12□□□□□ -0.49
CLIP1-201ENST00000302528 PUF60Q9UHX1 559 aaKnown RBP12□□□□□ -0.49
CLIP1-201ENST00000302528 MINDY4BA8MYZ0 360 aa12□□□□□ -0.49
CLIP1-201ENST00000302528 ZSCAN30Q86W11 494 aa12□□□□□ -0.49
CLIP1-201ENST00000302528 A0A1W2PRG0 241 aa12□□□□□ -0.49
CLIP1-201ENST00000302528 PRC1O43663 620 aa12□□□□□ -0.49
CLIP1-201ENST00000302528 NOP2P46087 812 aaKnown RBP12□□□□□ -0.49
CLIP1-201ENST00000302528 MTIF2P46199 727 aaKnown RBP12□□□□□ -0.49
CLIP1-201ENST00000302528 TTLL12Q14166 644 aaPredicted RBP12□□□□□ -0.49
CLIP1-201ENST00000302528 ZNF530Q6P9A1 599 aaPredicted RBP12□□□□□ -0.49
CLIP1-201ENST00000302528 LRRC45Q96CN5 670 aa12□□□□□ -0.49
CLIP1-201ENST00000302528 NDC80O14777 642 aa11.99□□□□□ -0.49
CLIP1-201ENST00000302528 PRKCSHP14314 528 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-201ENST00000302528 CTCFLQ8NI51 663 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-201ENST00000302528 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLIP1-201ENST00000302528 V9GYY5 206 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-201ENST00000302528 CCDC85AQ96PX6 553 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-201ENST00000302528 NAP1L3Q99457 506 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-201ENST00000302528 CCDC196A0A1B0GTZ2 297 aa11.99□□□□□ -0.49
CLIP1-201ENST00000302528 IQCGQ9H095 443 aaKnown RBP11.99□□□□□ -0.49
CLIP1-201ENST00000302528 CLIP2Q9UDT6 1046 aa11.99□□□□□ -0.49
CLIP1-201ENST00000302528 ATP2C2O75185 946 aa11.99□□□□□ -0.49
CLIP1-201ENST00000302528 CCDC40Q4G0X9 1142 aa11.99□□□□□ -0.49
CLIP1-201ENST00000302528 CIZ1Q9ULV3 898 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-201ENST00000302528 ZNF354CQ86Y25 554 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 IL1RAPL2Q9NP60 686 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 BCAR3O75815 825 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 DZIP1Q86YF9 867 aaKnown RBP11.98□□□□□ -0.49
CLIP1-201ENST00000302528 DDX12PQ92771 950 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 U3KPZ7 1027 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-201ENST00000302528 PDE3AQ14432 1141 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 RGS22Q8NE09 1264 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 TSR2Q969E8 191 aaKnown RBP11.98□□□□□ -0.49
CLIP1-201ENST00000302528 CA8P35219 290 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 PSMC4P43686 418 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 CCDC194A0A1B0GVG4 234 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 BAG4O95429 457 aaKnown RBP11.98□□□□□ -0.49
CLIP1-201ENST00000302528 MNAT1P51948 309 aa11.98□□□□□ -0.49
CLIP1-201ENST00000302528 HSPA4P34932 840 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 METTL24Q5JXM2 366 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 CHD1LQ86WJ1 897 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 PROSER2Q86WR7 435 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-201ENST00000302528 CCDC155Q8N6L0 562 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 ANAPC4Q9UJX5 808 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 HFM1A2PYH4 1435 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 KIAA0753Q2KHM9 967 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 TRMT1Q9NXH9 659 aaKnown RBP11.97□□□□□ -0.49
CLIP1-201ENST00000302528 SEPT6Q14141 434 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 CAVIN4Q5BKX8 364 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 TRMT1LQ7Z2T5 733 aaKnown RBP11.97□□□□□ -0.49
CLIP1-201ENST00000302528 MCM4P33991 863 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 SULT6B1Q6IMI4 303 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 ZNF444Q8N0Y2 327 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-201ENST00000302528 OTUD6BQ8N6M0 293 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 C8orf76Q96K31 380 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 TTC21AQ8NDW8 1320 aa11.97□□□□□ -0.49
CLIP1-201ENST00000302528 SLU7O95391 586 aaKnown RBP11.96□□□□□ -0.49
CLIP1-201ENST00000302528 TPD52P55327 224 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-201ENST00000302528 STXBP4Q6ZWJ1 553 aa11.96□□□□□ -0.49
CLIP1-201ENST00000302528 CNNM3Q8NE01 707 aa11.96□□□□□ -0.49
CLIP1-201ENST00000302528 NOL3O60936 208 aaKnown RBP11.96□□□□□ -0.49
CLIP1-201ENST00000302528 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLIP1-201ENST00000302528 KIF4AO95239 1232 aa11.96□□□□□ -0.49
CLIP1-201ENST00000302528 CKAP4Q07065 602 aaKnown RBP11.96□□□□□ -0.49
CLIP1-201ENST00000302528 TMEM132EQ6IEE7 984 aa11.96□□□□□ -0.49
CLIP1-201ENST00000302528 SYCP3Q8IZU3 236 aa11.96□□□□□ -0.49
CLIP1-201ENST00000302528 PLCD3Q8N3E9 789 aa11.96□□□□□ -0.49
CLIP1-201ENST00000302528 SCAND2PQ9GZW5 306 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-201ENST00000302528 NAPBQ9H115 298 aa11.96□□□□□ -0.49
CLIP1-201ENST00000302528 PAIP2Q9BPZ3 127 aaKnown RBP11.96□□□□□ -0.5
CLIP1-201ENST00000302528 MYO1BO43795 1136 aa11.96□□□□□ -0.5
CLIP1-201ENST00000302528 NLRP5P59047 1200 aa11.96□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC183Q5T5S1 534 aa11.96□□□□□ -0.5
CLIP1-201ENST00000302528 DNAAF4Q8WXU2 420 aa11.96□□□□□ -0.5
CLIP1-201ENST00000302528 CDCA7LQ96GN5 454 aa11.96□□□□□ -0.5
CLIP1-201ENST00000302528 JADE2Q9NQC1 790 aa11.96□□□□□ -0.5
CLIP1-201ENST00000302528 HSF2BPO75031 334 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 CYB5RLQ6IPT4 315 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 NSRP1Q9H0G5 558 aaKnown RBP11.95□□□□□ -0.5
CLIP1-201ENST00000302528 DYNC1I1O14576 645 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 RANBP6O60518 1105 aaKnown RBP11.95□□□□□ -0.5
CLIP1-201ENST00000302528 IDEP14735 1019 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 MAP7D1Q3KQU3 841 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 DDX46Q7L014 1031 aaKnown RBP11.95□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC82Q8N4S0 544 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 CALML4Q96GE6 196 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 SMC6Q96SB8 1091 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 EFCAB5A4FU69 1503 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 AMPD3Q01432 767 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 CFAP58Q5T655 872 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 JPH4Q96JJ6 628 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 SYNCQ9H7C4 482 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 IQCA1Q86XH1 822 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 AKAP2Q9Y2D5 859 aa11.95□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC174Q6PII3 467 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 GAPVD1Q14C86 1478 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms