RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 ANXA1P04083 346 aa17.85■□□□□ 0.45
C9orf3-202ENST00000297979 PLCH1Q4KWH8 1693 aa17.85■□□□□ 0.45
C9orf3-202ENST00000297979 CHD1LQ86WJ1 897 aa17.85■□□□□ 0.45
C9orf3-202ENST00000297979 ERVV-2B6SEH9 535 aa17.84■□□□□ 0.45
C9orf3-202ENST00000297979 GNAI3P08754 354 aa17.84■□□□□ 0.45
C9orf3-202ENST00000297979 PIP4K2BP78356 416 aa17.84■□□□□ 0.45
C9orf3-202ENST00000297979 ZNF496Q96IT1 587 aaPredicted RBP17.84■□□□□ 0.45
C9orf3-202ENST00000297979 DDX54Q8TDD1 881 aaKnown RBP17.84■□□□□ 0.45
C9orf3-202ENST00000297979 HYPKQ9NX55 129 aa17.84■□□□□ 0.45
C9orf3-202ENST00000297979 ANP32AP39687 249 aaKnown RBP17.83■□□□□ 0.45
C9orf3-202ENST00000297979 PROSER3Q2NL68 480 aa17.83■□□□□ 0.45
C9orf3-202ENST00000297979 FMNL2Q96PY5 1086 aa17.83■□□□□ 0.45
C9orf3-202ENST00000297979 GNAI2P04899 355 aa17.83■□□□□ 0.44
C9orf3-202ENST00000297979 DNAAF4Q8WXU2 420 aa17.83■□□□□ 0.44
C9orf3-202ENST00000297979 LNPKQ9C0E8 428 aa17.83■□□□□ 0.44
C9orf3-202ENST00000297979 DDX21Q9NR30 783 aaKnown RBP eCLIP17.83■□□□□ 0.44
C9orf3-202ENST00000297979 DISP2A7MBM2 1401 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 ADCY9O60503 1353 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 PI4KAP2A4QPH2 592 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 ANKRD45Q5TZF3 282 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 PI4KAP1Q8N8J0 262 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 GLI3P10071 1580 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 SNRPA1P09661 255 aaKnown RBP17.82■□□□□ 0.44
C9orf3-202ENST00000297979 SRCIN1Q9C0H9 1055 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 DCTPP1Q9H773 170 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 PAPPAQ13219 1627 aa17.82■□□□□ 0.44
C9orf3-202ENST00000297979 LAMB4A4D0S4 1761 aa17.81■□□□□ 0.44
C9orf3-202ENST00000297979 WNK3Q9BYP7 1800 aa17.81■□□□□ 0.44
C9orf3-202ENST00000297979 UBR2Q8IWV8 1755 aa17.81■□□□□ 0.44
C9orf3-202ENST00000297979 HMMRO75330 724 aa17.8■□□□□ 0.44
C9orf3-202ENST00000297979 NRAPQ86VF7 1730 aa17.8■□□□□ 0.44
C9orf3-202ENST00000297979 TOGARAM1Q9Y4F4 1720 aa17.8■□□□□ 0.44
C9orf3-202ENST00000297979 ADAMTS2O95450 1211 aa17.8■□□□□ 0.44
C9orf3-202ENST00000297979 PDIA6Q15084 440 aa17.8■□□□□ 0.44
C9orf3-202ENST00000297979 BEND3Q5T5X7 828 aa17.8■□□□□ 0.44
C9orf3-202ENST00000297979 USP44Q9H0E7 712 aa17.8■□□□□ 0.44
C9orf3-202ENST00000297979 KSR2Q6VAB6 950 aa17.79■□□□□ 0.44
C9orf3-202ENST00000297979 UBAP1LF5GYI3 381 aa17.78■□□□□ 0.44
C9orf3-202ENST00000297979 DDX58O95786 925 aaKnown RBP17.78■□□□□ 0.44
C9orf3-202ENST00000297979 UBTFL1P0CB47 393 aaPredicted RBP17.78■□□□□ 0.44
C9orf3-202ENST00000297979 TPRNQ4KMQ1 711 aa17.78■□□□□ 0.44
C9orf3-202ENST00000297979 SAMD1Q6SPF0 538 aaPredicted RBP17.78■□□□□ 0.44
C9orf3-202ENST00000297979 MAP3K2Q9Y2U5 619 aa17.78■□□□□ 0.44
C9orf3-202ENST00000297979 KCPQ6ZWJ8 1503 aa17.77■□□□□ 0.44
C9orf3-202ENST00000297979 USP16Q9Y5T5 823 aa17.77■□□□□ 0.44
C9orf3-202ENST00000297979 LRRFIP2Q9Y608 721 aaKnown RBP17.76■□□□□ 0.43
C9orf3-202ENST00000297979 TNS2Q63HR2 1409 aa17.76■□□□□ 0.43
C9orf3-202ENST00000297979 NUTM2BA6NNL0 878 aaPredicted RBP17.76■□□□□ 0.43
C9orf3-202ENST00000297979 NUTM2EB1AL46 878 aaPredicted RBP17.76■□□□□ 0.43
C9orf3-202ENST00000297979 NUTM2AQ8IVF1 878 aaPredicted RBP17.76■□□□□ 0.43
C9orf3-202ENST00000297979 ZBTB47Q9UFB7 747 aaPredicted RBP17.76■□□□□ 0.43
C9orf3-202ENST00000297979 NWD2Q9ULI1 1742 aa17.75■□□□□ 0.43
C9orf3-202ENST00000297979 ALDH1L1O75891 902 aa17.75■□□□□ 0.43
C9orf3-202ENST00000297979 MYL6BP14649 208 aa17.75■□□□□ 0.43
C9orf3-202ENST00000297979 ATP8B2P98198 1209 aa17.75■□□□□ 0.43
C9orf3-202ENST00000297979 AIMP1Q12904 312 aaKnown RBP17.75■□□□□ 0.43
C9orf3-202ENST00000297979 TMOD3Q9NYL9 352 aa17.75■□□□□ 0.43
C9orf3-202ENST00000297979 LRP6O75581 1613 aa17.74■□□□□ 0.43
C9orf3-202ENST00000297979 LRP10Q7Z4F1 713 aa17.73■□□□□ 0.43
C9orf3-202ENST00000297979 XAGE3Q8WTP9 111 aa17.73■□□□□ 0.43
C9orf3-202ENST00000297979 CDCA7Q9BWT1 371 aaPredicted RBP17.73■□□□□ 0.43
C9orf3-202ENST00000297979 ERBB4Q15303 1308 aa17.73■□□□□ 0.43
C9orf3-202ENST00000297979 SPATA31A1Q5TZJ5 1347 aa17.73■□□□□ 0.43
C9orf3-202ENST00000297979 EXOC5O00471 708 aa17.72■□□□□ 0.43
C9orf3-202ENST00000297979 IPO9Q96P70 1041 aaKnown RBP17.72■□□□□ 0.43
C9orf3-202ENST00000297979 THRAP3Q9Y2W1 955 aaKnown RBP17.72■□□□□ 0.43
C9orf3-202ENST00000297979 ITGB4P16144 1822 aa17.72■□□□□ 0.43
C9orf3-202ENST00000297979 SLIT2O94813 1529 aa17.72■□□□□ 0.43
C9orf3-202ENST00000297979 PNMA6EA0A0J9YXQ4 647 aa17.72■□□□□ 0.43
C9orf3-202ENST00000297979 NBPF7P0C2Y1 421 aaPredicted RBP17.72■□□□□ 0.43
C9orf3-202ENST00000297979 COPS6Q7L5N1 327 aa17.72■□□□□ 0.43
C9orf3-202ENST00000297979 RIC3Q7Z5B4 369 aa17.72■□□□□ 0.43
C9orf3-202ENST00000297979 LINS1Q8NG48 757 aa17.72■□□□□ 0.43
C9orf3-202ENST00000297979 MSH5O43196 834 aa17.71■□□□□ 0.43
C9orf3-202ENST00000297979 BMP2KLQ5H9B9 411 aa17.71■□□□□ 0.42
C9orf3-202ENST00000297979 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.71■□□□□ 0.42
C9orf3-202ENST00000297979 PTCD1O75127 700 aaKnown RBP17.7■□□□□ 0.42
C9orf3-202ENST00000297979 CWF19L2Q2TBE0 894 aaKnown RBP17.7■□□□□ 0.42
C9orf3-202ENST00000297979 JCADQ9P266 1359 aa17.69■□□□□ 0.42
C9orf3-202ENST00000297979 IBTKQ9P2D0 1353 aaPredicted RBP17.69■□□□□ 0.42
C9orf3-202ENST00000297979 APBB1O00213 710 aa17.69■□□□□ 0.42
C9orf3-202ENST00000297979 SEC24BO95487 1268 aa17.69■□□□□ 0.42
C9orf3-202ENST00000297979 PIP4K2AP48426 406 aaPredicted RBP17.69■□□□□ 0.42
C9orf3-202ENST00000297979 PIGBQ92521 554 aa17.69■□□□□ 0.42
C9orf3-202ENST00000297979 C9orf78Q9NZ63 289 aaPredicted RBP17.69■□□□□ 0.42
C9orf3-202ENST00000297979 NEXNQ0ZGT2 675 aa17.69■□□□□ 0.42
C9orf3-202ENST00000297979 SSH3Q8TE77 659 aa17.69■□□□□ 0.42
C9orf3-202ENST00000297979 HDAC5Q9UQL6 1122 aa17.69■□□□□ 0.42
C9orf3-202ENST00000297979 ARFGEF2Q9Y6D5 1785 aa17.68■□□□□ 0.42
C9orf3-202ENST00000297979 SPATA31A5Q5VU36 1347 aa17.68■□□□□ 0.42
C9orf3-202ENST00000297979 SPATA31A7Q8IWB4 1347 aa17.68■□□□□ 0.42
C9orf3-202ENST00000297979 ANKRD13DQ6ZTN6 518 aa17.68■□□□□ 0.42
C9orf3-202ENST00000297979 PLEKHM2Q8IWE5 1019 aa17.68■□□□□ 0.42
C9orf3-202ENST00000297979 EXOC6BQ9Y2D4 811 aa17.68■□□□□ 0.42
C9orf3-202ENST00000297979 SMARCA5O60264 1052 aaPredicted RBP17.68■□□□□ 0.42
C9orf3-202ENST00000297979 BRD2P25440 801 aaKnown RBP17.68■□□□□ 0.42
C9orf3-202ENST00000297979 METTL22Q9BUU2 404 aaPredicted RBP17.68■□□□□ 0.42
C9orf3-202ENST00000297979 POLA2Q14181 598 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 PPP1R42Q7Z4L9 355 aa17.67■□□□□ 0.42
C9orf3-202ENST00000297979 BCL9O00512 1426 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms