RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 TAOK1Q7L7X3 1001 aa5.59□□□□□ -1.52
CSMD3-201ENST00000297405 WASF1Q92558 559 aa5.59□□□□□ -1.52
CSMD3-201ENST00000297405 UPF3BQ9BZI7 483 aaKnown RBP5.59□□□□□ -1.52
CSMD3-201ENST00000297405 CWC25Q9NXE8 425 aaPredicted RBP5.59□□□□□ -1.52
CSMD3-201ENST00000297405 FERP16591 822 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 LMAN1P49257 510 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 TRPC3Q13507 836 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 CFAP157Q5JU67 520 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 NUP62CLQ9H1M0 184 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 RTTNQ86VV8 2226 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 TAX1BP1Q86VP1 789 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 EVI5O60447 810 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 CAPN2P17655 700 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 RBM10P98175 930 aaKnown RBP5.58□□□□□ -1.52
CSMD3-201ENST00000297405 KLHL40Q2TBA0 621 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 CNTROBQ8N137 903 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 POTEB3A0JP26 581 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 SNW1Q13573 536 aaKnown RBP5.58□□□□□ -1.52
CSMD3-201ENST00000297405 POTEBQ6S5H4 581 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 SH2B1Q9NRF2 756 aaPredicted RBP5.58□□□□□ -1.52
CSMD3-201ENST00000297405 GIGYF1O75420 1035 aaPredicted RBP5.58□□□□□ -1.52
CSMD3-201ENST00000297405 PPP2R5EQ16537 467 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 ANKRD45Q5TZF3 282 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 NBPF11Q86T75 865 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 ANAPC4Q9UJX5 808 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 RAD50Q92878 1312 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 TTC19Q6DKK2 380 aaPredicted RBP5.58□□□□□ -1.52
CSMD3-201ENST00000297405 STMN2Q93045 179 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 CASQ2O14958 399 aaPredicted RBP5.58□□□□□ -1.52
CSMD3-201ENST00000297405 SEPT2Q15019 361 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 CFDP1Q9UEE9 299 aaPredicted RBP5.58□□□□□ -1.52
CSMD3-201ENST00000297405 CTAGE9A4FU28 777 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 NAA25Q14CX7 972 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 SETDB1Q15047 1291 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 SPECC1Q5M775 1068 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 CCDC77Q9BR77 488 aa5.58□□□□□ -1.52
CSMD3-201ENST00000297405 RAB3GAP2Q9H2M9 1393 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 SMARCA2P51531 1590 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 MGEA5O60502 916 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 MPHOSPH6Q99547 160 aaKnown RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 RASAL2Q9UJF2 1139 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 RPGRIP1LQ68CZ1 1315 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 CCDC57Q2TAC2 916 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 RAB3IPQ96QF0 476 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 DDX19AQ9NUU7 478 aaKnown RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 CHGAP10645 457 aaKnown RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 MIER3Q7Z3K6 550 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 POGKQ9P215 609 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 VPS37CA5D8V6 355 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 ATP2A1O14983 1001 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 SLC3A2P08195 630 aaKnown RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 CACNA2D4Q7Z3S7 1137 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 TRIM22Q8IYM9 498 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 MED4Q9NPJ6 270 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 CTAGE6Q86UF2 777 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 IKBKGQ9Y6K9 419 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 WHAMMQ8TF30 809 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 TPX2Q9ULW0 747 aaKnown RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 HMGB2P26583 209 aaKnown RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 SMARCC2Q8TAQ2 1214 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 CUX2O14529 1486 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 ANKRD30BQ9BXX2 1392 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 PLCD3Q8N3E9 789 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 GOLGA1Q92805 767 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 CCDC68Q9H2F9 335 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 SAMD15Q9P1V8 674 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 ZKSCAN5Q9Y2L8 839 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 RNF187Q5TA31 235 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 ISM2Q6H9L7 571 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 CEP57Q86XR8 500 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 PRKRIP1Q9H875 184 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 BMP2KQ9NSY1 1161 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-201ENST00000297405 ITSN2Q9NZM3 1697 aa5.57□□□□□ -1.52
CSMD3-201ENST00000297405 CCDC92Q53HC0 331 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 UTP14AQ9BVJ6 771 aaKnown RBP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 ZMYM3Q14202 1370 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 TNNT1P13805 278 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 NBPF9Q3BBW0 867 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 KIAA1524Q8TCG1 905 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 TSGA10Q9BZW7 698 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 DDX58O95786 925 aaKnown RBP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 CBX1P83916 185 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 STX1AQ16623 288 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 DRC3Q9H069 523 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 U2AF1L5P0DN76 240 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 U2AF1Q01081 240 aaKnown RBP eCLIP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 NEUROD2Q15784 382 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 RPUSD2Q8IZ73 545 aaKnown RBP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 TSPYL2Q9H2G4 693 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 SELENOOQ9BVL4 669 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 SLU7O95391 586 aaKnown RBP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 VAV2P52735 878 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 TSC1Q92574 1164 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 USP6NLQ92738 828 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 UBE2HP62256 183 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 EFCAB13Q8IY85 973 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 FAM76AQ8TAV0 307 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 FRAT2O75474 233 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-201ENST00000297405 CETN1Q12798 172 aa5.56□□□□□ -1.52
CSMD3-201ENST00000297405 IQCDQ96DY2 449 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms