RNA–Protein interactions for RNA: ENST00000291458.9

CCDC58-201, Transcript of coiled-coil domain containing 58, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC58, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58-201ENST00000291458 ZNF831Q5JPB2 1677 aa13.08□□□□□ -0.32
CCDC58-201ENST00000291458 GSE1Q14687 1217 aa13.07□□□□□ -0.32
CCDC58-201ENST00000291458 RSPH6AQ9H0K4 717 aa13.07□□□□□ -0.32
CCDC58-201ENST00000291458 SLC52A2Q9HAB3 445 aa13.07□□□□□ -0.32
CCDC58-201ENST00000291458 SIPA1L3O60292 1781 aaPredicted RBP13.07□□□□□ -0.32
CCDC58-201ENST00000291458 GAS2L2Q8NHY3 880 aa13.06□□□□□ -0.32
CCDC58-201ENST00000291458 PHACTR3Q96KR7 559 aa13.06□□□□□ -0.32
CCDC58-201ENST00000291458 KCPQ6ZWJ8 1503 aa13.06□□□□□ -0.32
CCDC58-201ENST00000291458 UBR2Q8IWV8 1755 aa13.06□□□□□ -0.32
CCDC58-201ENST00000291458 DLG5Q8TDM6 1919 aa13.05□□□□□ -0.32
CCDC58-201ENST00000291458 SSFA2P28290 1259 aa13.05□□□□□ -0.32
CCDC58-201ENST00000291458 DCAF8Q5TAQ9 597 aa13.05□□□□□ -0.32
CCDC58-201ENST00000291458 FLAD1Q8NFF5 587 aa13.05□□□□□ -0.32
CCDC58-201ENST00000291458 NLGN2Q8NFZ4 835 aa13.05□□□□□ -0.32
CCDC58-201ENST00000291458 WWC3Q9ULE0 1092 aa13.05□□□□□ -0.32
CCDC58-201ENST00000291458 CICQ96RK0 1608 aaPredicted RBP13.04□□□□□ -0.32
CCDC58-201ENST00000291458 GNAT3A8MTJ3 354 aa13.04□□□□□ -0.32
CCDC58-201ENST00000291458 CRKLP46109 303 aaKnown RBP13.04□□□□□ -0.32
CCDC58-201ENST00000291458 TEFQ10587 303 aa13.04□□□□□ -0.32
CCDC58-201ENST00000291458 DNAJC10Q8IXB1 793 aa13.04□□□□□ -0.32
CCDC58-201ENST00000291458 TSPYL2Q9H2G4 693 aaPredicted RBP13.04□□□□□ -0.32
CCDC58-201ENST00000291458 RTCBQ9Y3I0 505 aaKnown RBP13.04□□□□□ -0.32
CCDC58-201ENST00000291458 CNTNAP4Q9C0A0 1308 aa13.04□□□□□ -0.32
CCDC58-201ENST00000291458 HMGB2P26583 209 aaKnown RBP13.02□□□□□ -0.33
CCDC58-201ENST00000291458 MCM10Q7L590 875 aa13.02□□□□□ -0.33
CCDC58-201ENST00000291458 TTC5Q8N0Z6 440 aa13.02□□□□□ -0.33
CCDC58-201ENST00000291458 DCTN1Q14203 1278 aa13.01□□□□□ -0.33
CCDC58-201ENST00000291458 GPR162Q16538 588 aa13.01□□□□□ -0.33
CCDC58-201ENST00000291458 TRAPPC3LQ5T215 181 aa13.01□□□□□ -0.33
CCDC58-201ENST00000291458 IL17REQ8NFR9 667 aa13.01□□□□□ -0.33
CCDC58-201ENST00000291458 SRP68Q9UHB9 627 aaKnown RBP13.01□□□□□ -0.33
CCDC58-201ENST00000291458 MMP10P09238 476 aa13□□□□□ -0.33
CCDC58-201ENST00000291458 YY1P25490 414 aa13□□□□□ -0.33
CCDC58-201ENST00000291458 RFC4P35249 363 aa13□□□□□ -0.33
CCDC58-201ENST00000291458 RTF1Q92541 710 aaKnown RBP13□□□□□ -0.33
CCDC58-201ENST00000291458 ARHGEF1Q92888 912 aaKnown RBP13□□□□□ -0.33
CCDC58-201ENST00000291458 CIZ1Q9ULV3 898 aaPredicted RBP13□□□□□ -0.33
CCDC58-201ENST00000291458 ZNF330Q9Y3S2 320 aaPredicted RBP13□□□□□ -0.33
CCDC58-201ENST00000291458 N4BP2Q86UW6 1770 aaPredicted RBP12.99□□□□□ -0.33
CCDC58-201ENST00000291458 KCNQ3O43525 872 aa12.99□□□□□ -0.33
CCDC58-201ENST00000291458 RPS6KA4O75676 772 aa12.99□□□□□ -0.33
CCDC58-201ENST00000291458 NEFMP07197 916 aa12.99□□□□□ -0.33
CCDC58-201ENST00000291458 CCDC87Q9NVE4 849 aa12.99□□□□□ -0.33
CCDC58-201ENST00000291458 ZBTB1Q9Y2K1 713 aa12.99□□□□□ -0.33
CCDC58-201ENST00000291458 CHD4Q14839 1912 aa12.99□□□□□ -0.33
CCDC58-201ENST00000291458 FCHSD2O94868 740 aa12.98□□□□□ -0.33
CCDC58-201ENST00000291458 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
CCDC58-201ENST00000291458 RALBP1Q15311 655 aa12.98□□□□□ -0.33
CCDC58-201ENST00000291458 RC3H1Q5TC82 1133 aaKnown RBP12.98□□□□□ -0.33
CCDC58-201ENST00000291458 ZNF496Q96IT1 587 aaPredicted RBP12.98□□□□□ -0.33
CCDC58-201ENST00000291458 COL15A1P39059 1388 aa12.97□□□□□ -0.33
CCDC58-201ENST00000291458 MYBBP1AQ9BQG0 1328 aaKnown RBP12.97□□□□□ -0.33
CCDC58-201ENST00000291458 MAPK8IP3Q9UPT6 1336 aa12.97□□□□□ -0.33
CCDC58-201ENST00000291458 BTBD11A6QL63 1104 aa12.97□□□□□ -0.33
CCDC58-201ENST00000291458 INTS5Q6P9B9 1019 aaKnown RBP12.97□□□□□ -0.33
CCDC58-201ENST00000291458 THUMPD2Q9BTF0 503 aaKnown RBP12.97□□□□□ -0.33
CCDC58-201ENST00000291458 CEMIPQ8WUJ3 1361 aa12.96□□□□□ -0.33
CCDC58-201ENST00000291458 SOS1Q07889 1333 aaPredicted RBP12.96□□□□□ -0.33
CCDC58-201ENST00000291458 CYP19A1P11511 503 aaPredicted RBP12.96□□□□□ -0.33
CCDC58-201ENST00000291458 GYS1P13807 737 aa12.96□□□□□ -0.33
CCDC58-201ENST00000291458 ZNF790Q6PG37 636 aa12.96□□□□□ -0.33
CCDC58-201ENST00000291458 ZNF579Q8NAF0 562 aaKnown RBP12.96□□□□□ -0.33
CCDC58-201ENST00000291458 HEG1Q9ULI3 1381 aa12.95□□□□□ -0.34
CCDC58-201ENST00000291458 USP42Q9H9J4 1324 aaKnown RBP12.95□□□□□ -0.34
CCDC58-201ENST00000291458 YBX3P16989 372 aaKnown RBP eCLIP12.95□□□□□ -0.34
CCDC58-201ENST00000291458 ZEB1P37275 1124 aaPredicted RBP12.95□□□□□ -0.34
CCDC58-201ENST00000291458 PIP4K2AP48426 406 aaPredicted RBP12.95□□□□□ -0.34
CCDC58-201ENST00000291458 EVX2Q03828 476 aa12.95□□□□□ -0.34
CCDC58-201ENST00000291458 CCDC146Q8IYE0 955 aa12.95□□□□□ -0.34
CCDC58-201ENST00000291458 SCN7AQ01118 1682 aa12.95□□□□□ -0.34
CCDC58-201ENST00000291458 KIF13BQ9NQT8 1826 aa12.95□□□□□ -0.34
CCDC58-201ENST00000291458 LAMB4A4D0S4 1761 aa12.94□□□□□ -0.34
CCDC58-201ENST00000291458 KDM3BQ7LBC6 1761 aa12.94□□□□□ -0.34
CCDC58-201ENST00000291458 KIAA1551Q9HCM1 1747 aa12.94□□□□□ -0.34
CCDC58-201ENST00000291458 PRAMEF22A3QJZ6 481 aa12.94□□□□□ -0.34
CCDC58-201ENST00000291458 USPL1Q5W0Q7 1092 aa12.94□□□□□ -0.34
CCDC58-201ENST00000291458 FMNL2Q96PY5 1086 aa12.94□□□□□ -0.34
CCDC58-201ENST00000291458 MIS18AQ9NYP9 233 aa12.94□□□□□ -0.34
CCDC58-201ENST00000291458 RRP7AQ9Y3A4 280 aaKnown RBP12.94□□□□□ -0.34
CCDC58-201ENST00000291458 PARP3Q9Y6F1 533 aa12.94□□□□□ -0.34
CCDC58-201ENST00000291458 AFDNP55196 1824 aaKnown RBP12.93□□□□□ -0.34
CCDC58-201ENST00000291458 ZPR1O75312 459 aa12.93□□□□□ -0.34
CCDC58-201ENST00000291458 NLGN1Q8N2Q7 840 aa12.93□□□□□ -0.34
CCDC58-201ENST00000291458 PLEKHF1Q96S99 279 aa12.93□□□□□ -0.34
CCDC58-201ENST00000291458 CD2APQ9Y5K6 639 aa12.93□□□□□ -0.34
CCDC58-201ENST00000291458 C10orf71Q711Q0 1435 aa12.93□□□□□ -0.34
CCDC58-201ENST00000291458 PXDNLA1KZ92 1463 aa12.92□□□□□ -0.34
CCDC58-201ENST00000291458 STARD3NLO95772 234 aa12.92□□□□□ -0.34
CCDC58-201ENST00000291458 DDR1Q08345 913 aa12.92□□□□□ -0.34
CCDC58-201ENST00000291458 WDR43Q15061 677 aaKnown RBP eCLIP12.92□□□□□ -0.34
CCDC58-201ENST00000291458 NFE2L2Q16236 605 aa12.92□□□□□ -0.34
CCDC58-201ENST00000291458 BICDL1Q6ZP65 573 aa12.92□□□□□ -0.34
CCDC58-201ENST00000291458 BCORQ6W2J9 1755 aa12.92□□□□□ -0.34
CCDC58-201ENST00000291458 A1BGP04217 495 aa12.91□□□□□ -0.34
CCDC58-201ENST00000291458 NEUROD2Q15784 382 aa12.91□□□□□ -0.34
CCDC58-201ENST00000291458 VSIG10Q8N0Z9 540 aa12.91□□□□□ -0.34
CCDC58-201ENST00000291458 CLCN6P51797 869 aa12.9□□□□□ -0.34
CCDC58-201ENST00000291458 PRKRIP1Q9H875 184 aaPredicted RBP12.9□□□□□ -0.34
CCDC58-201ENST00000291458 TBC1D2BQ9UPU7 963 aa12.9□□□□□ -0.34
CCDC58-201ENST00000291458 A0A0G2JLW4 131 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms