RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 GPT2Q8TD30 523 aa12.59□□□□□ -0.39
SKA1-201ENST00000285116 LRRCC1Q9C099 1032 aa12.59□□□□□ -0.39
SKA1-201ENST00000285116 TSPYL4Q9UJ04 414 aa12.59□□□□□ -0.39
SKA1-201ENST00000285116 RTF1Q92541 710 aaKnown RBP12.59□□□□□ -0.39
SKA1-201ENST00000285116 PKP1Q13835 747 aa12.58□□□□□ -0.39
SKA1-201ENST00000285116 CCDC30Q5VVM6 783 aa12.58□□□□□ -0.39
SKA1-201ENST00000285116 ZGPATQ8N5A5 531 aaKnown RBP12.58□□□□□ -0.39
SKA1-201ENST00000285116 PRPF40AO75400 957 aaKnown RBP12.58□□□□□ -0.4
SKA1-201ENST00000285116 MX1P20591 662 aa12.58□□□□□ -0.4
SKA1-201ENST00000285116 G2E3Q7L622 706 aa12.58□□□□□ -0.4
SKA1-201ENST00000285116 TMX3Q96JJ7 454 aa12.58□□□□□ -0.4
SKA1-201ENST00000285116 LMO7Q8WWI1 1683 aa12.58□□□□□ -0.4
SKA1-201ENST00000285116 CHMLP26374 656 aa12.58□□□□□ -0.4
SKA1-201ENST00000285116 CCDC94Q9BW85 323 aaPredicted RBP12.58□□□□□ -0.4
SKA1-201ENST00000285116 STK31Q9BXU1 1019 aa12.58□□□□□ -0.4
SKA1-201ENST00000285116 CHD2O14647 1828 aaKnown RBP12.57□□□□□ -0.4
SKA1-201ENST00000285116 UTP14CQ5TAP6 766 aaKnown RBP12.57□□□□□ -0.4
SKA1-201ENST00000285116 FLIIQ13045 1269 aa12.56□□□□□ -0.4
SKA1-201ENST00000285116 THEMISQ8N1K5 641 aaPredicted RBP12.56□□□□□ -0.4
SKA1-201ENST00000285116 MAP3K5Q99683 1374 aa12.56□□□□□ -0.4
SKA1-201ENST00000285116 RAB11FIP3O75154 756 aa12.56□□□□□ -0.4
SKA1-201ENST00000285116 TMEM87AQ8NBN3 555 aa12.56□□□□□ -0.4
SKA1-201ENST00000285116 RBM27Q9P2N5 1060 aaKnown RBP12.56□□□□□ -0.4
SKA1-201ENST00000285116 SSH3Q8TE77 659 aa12.55□□□□□ -0.4
SKA1-201ENST00000285116 LMTK3Q96Q04 1460 aa12.55□□□□□ -0.4
SKA1-201ENST00000285116 USP42Q9H9J4 1324 aaKnown RBP12.55□□□□□ -0.4
SKA1-201ENST00000285116 KIAA2012Q0VF49 1180 aa12.55□□□□□ -0.4
SKA1-201ENST00000285116 TMEM63CQ9P1W3 806 aa12.55□□□□□ -0.4
SKA1-201ENST00000285116 LTN1O94822 1766 aa12.55□□□□□ -0.4
SKA1-201ENST00000285116 NEK4P51957 841 aa12.55□□□□□ -0.4
SKA1-201ENST00000285116 POLA2Q14181 598 aa12.55□□□□□ -0.4
SKA1-201ENST00000285116 EYA1Q99502 592 aa12.55□□□□□ -0.4
SKA1-201ENST00000285116 SYCE3A1L190 88 aa12.54□□□□□ -0.4
SKA1-201ENST00000285116 GNAT3A8MTJ3 354 aa12.54□□□□□ -0.4
SKA1-201ENST00000285116 MYRIPQ8NFW9 859 aa12.54□□□□□ -0.4
SKA1-201ENST00000285116 CHMP4AQ9BY43 222 aa12.54□□□□□ -0.4
SKA1-201ENST00000285116 TBX22Q9Y458 520 aa12.54□□□□□ -0.4
SKA1-201ENST00000285116 HOXB7P09629 217 aa12.54□□□□□ -0.4
SKA1-201ENST00000285116 DMTNQ08495 405 aa12.54□□□□□ -0.4
SKA1-201ENST00000285116 CEMIPQ8WUJ3 1361 aa12.53□□□□□ -0.4
SKA1-201ENST00000285116 F6X3S4 739 aa12.53□□□□□ -0.4
SKA1-201ENST00000285116 HSPA4P34932 840 aa12.53□□□□□ -0.4
SKA1-201ENST00000285116 ANKLE2Q86XL3 938 aa12.53□□□□□ -0.4
SKA1-201ENST00000285116 SYAP1Q96A49 352 aaPredicted RBP12.53□□□□□ -0.4
SKA1-201ENST00000285116 FOXO3O43524 673 aa12.53□□□□□ -0.4
SKA1-201ENST00000285116 PRIMPOLQ96LW4 560 aa12.53□□□□□ -0.4
SKA1-201ENST00000285116 OVOS2A0A0G2JMS6 1433 aa12.53□□□□□ -0.4
SKA1-201ENST00000285116 ADGRL3Q9HAR2 1447 aa12.53□□□□□ -0.4
SKA1-201ENST00000285116 PNMA6EA0A0J9YXQ4 647 aa12.52□□□□□ -0.4
SKA1-201ENST00000285116 PTMAP06454 111 aaKnown RBP12.52□□□□□ -0.4
SKA1-201ENST00000285116 EXOC6BQ9Y2D4 811 aa12.52□□□□□ -0.4
SKA1-201ENST00000285116 PHF14O94880 888 aa12.52□□□□□ -0.41
SKA1-201ENST00000285116 SLC4A10Q6U841 1118 aa12.52□□□□□ -0.41
SKA1-201ENST00000285116 LTV1Q96GA3 475 aaPredicted RBP12.52□□□□□ -0.41
SKA1-201ENST00000285116 ORAI2Q96SN7 254 aa12.52□□□□□ -0.41
SKA1-201ENST00000285116 HMGN5P82970 282 aaKnown RBP12.51□□□□□ -0.41
SKA1-201ENST00000285116 ARID3AQ99856 593 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 USP44Q9H0E7 712 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 PALD1Q9ULE6 856 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 RPAP1Q9BWH6 1393 aaPredicted RBP12.51□□□□□ -0.41
SKA1-201ENST00000285116 CAMTA1Q9Y6Y1 1673 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 WDR33Q9C0J8 1336 aaKnown RBP12.51□□□□□ -0.41
SKA1-201ENST00000285116 TAF7Q15545 349 aaPredicted RBP12.51□□□□□ -0.41
SKA1-201ENST00000285116 RAD50Q92878 1312 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 NFAT5O94916 1531 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 UVSSAQ2YD98 709 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 FAM184AQ8NB25 1140 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 TSPY26PQ9H489 355 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 MIS18AQ9NYP9 233 aa12.51□□□□□ -0.41
SKA1-201ENST00000285116 APBB1O00213 710 aa12.5□□□□□ -0.41
SKA1-201ENST00000285116 FKBP5Q13451 457 aaPredicted RBP12.5□□□□□ -0.41
SKA1-201ENST00000285116 ESCO1Q5FWF5 840 aa12.5□□□□□ -0.41
SKA1-201ENST00000285116 PRDM10Q9NQV6 1147 aa12.5□□□□□ -0.41
SKA1-201ENST00000285116 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.5□□□□□ -0.41
SKA1-201ENST00000285116 ADAMTS7Q9UKP4 1686 aa12.5□□□□□ -0.41
SKA1-201ENST00000285116 ZSCAN20P17040 1043 aaPredicted RBP12.5□□□□□ -0.41
SKA1-201ENST00000285116 HOXC9P31274 260 aa12.5□□□□□ -0.41
SKA1-201ENST00000285116 GTF2F1P35269 517 aaKnown RBP eCLIP12.5□□□□□ -0.41
SKA1-201ENST00000285116 PROSER2Q86WR7 435 aaPredicted RBP12.5□□□□□ -0.41
SKA1-201ENST00000285116 RNF214Q8ND24 703 aa12.5□□□□□ -0.41
SKA1-201ENST00000285116 SIPA1L3O60292 1781 aaPredicted RBP12.5□□□□□ -0.41
SKA1-201ENST00000285116 NCAPD2Q15021 1401 aa12.5□□□□□ -0.41
SKA1-201ENST00000285116 DNTTIP2Q5QJE6 756 aaKnown RBP12.49□□□□□ -0.41
SKA1-201ENST00000285116 PI4K2BQ8TCG2 481 aa12.49□□□□□ -0.41
SKA1-201ENST00000285116 TTC14Q96N46 770 aa12.49□□□□□ -0.41
SKA1-201ENST00000285116 NSFL1CQ9UNZ2 370 aaKnown RBP12.49□□□□□ -0.41
SKA1-201ENST00000285116 LRRFIP2Q9Y608 721 aaKnown RBP12.49□□□□□ -0.41
SKA1-201ENST00000285116 UBTFL1P0CB47 393 aaPredicted RBP12.49□□□□□ -0.41
SKA1-201ENST00000285116 AMPHP49418 695 aa12.49□□□□□ -0.41
SKA1-201ENST00000285116 ANO2Q9NQ90 1003 aa12.49□□□□□ -0.41
SKA1-201ENST00000285116 ZNF335Q9H4Z2 1342 aaPredicted RBP12.49□□□□□ -0.41
SKA1-201ENST00000285116 SGSM2O43147 1006 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 LETM1O95202 739 aaPredicted RBP12.48□□□□□ -0.41
SKA1-201ENST00000285116 NGDNQ8NEJ9 315 aaKnown RBP12.48□□□□□ -0.41
SKA1-201ENST00000285116 IL17REQ8NFR9 667 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 CABLES1Q8TDN4 633 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 PIBF1Q8WXW3 757 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 KCNB2Q92953 911 aa12.48□□□□□ -0.41
SKA1-201ENST00000285116 GTPBP4Q9BZE4 634 aaKnown RBP12.48□□□□□ -0.41
SKA1-201ENST00000285116 ZHX1Q9UKY1 873 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms