RNA–Protein interactions for RNA: ENST00000278544.9

ACER3-201, Transcript of alkaline ceramidase 3, humanhuman

TSL 1 (best)

Gene ACER3, Length 3,500 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACER3-201ENST00000278544 SEPT12Q8IYM1 358 aa16.79■□□□□ 0.28
ACER3-201ENST00000278544 COL22A1Q8NFW1 1626 aaPredicted RBP16.79■□□□□ 0.28
ACER3-201ENST00000278544 ZBTB40Q9NUA8 1239 aa16.79■□□□□ 0.28
ACER3-201ENST00000278544 NKX1-1Q15270 411 aaPredicted RBP16.78■□□□□ 0.28
ACER3-201ENST00000278544 PELP1Q8IZL8 1130 aaKnown RBP16.78■□□□□ 0.28
ACER3-201ENST00000278544 TTLL7Q6ZT98 887 aa16.78■□□□□ 0.28
ACER3-201ENST00000278544 SLC4A9Q96Q91 983 aa16.78■□□□□ 0.28
ACER3-201ENST00000278544 BABAM1Q9NWV8 329 aa16.78■□□□□ 0.28
ACER3-201ENST00000278544 ABCC4O15439 1325 aa16.78■□□□□ 0.28
ACER3-201ENST00000278544 PDIA6Q15084 440 aa16.78■□□□□ 0.28
ACER3-201ENST00000278544 NBPF26B4DH59 902 aa16.77■□□□□ 0.28
ACER3-201ENST00000278544 NBPF14Q5TI25 921 aa16.77■□□□□ 0.28
ACER3-201ENST00000278544 NBPF10Q6P3W6 841 aaKnown RBP16.77■□□□□ 0.28
ACER3-201ENST00000278544 NBPF15Q8N660 670 aa16.77■□□□□ 0.28
ACER3-201ENST00000278544 VIRMAQ69YN4 1812 aaKnown RBP16.77■□□□□ 0.28
ACER3-201ENST00000278544 ARHGAP45Q92619 1136 aa16.77■□□□□ 0.27
ACER3-201ENST00000278544 SRCAPQ6ZRS2 3230 aa16.77■□□□□ 0.27
ACER3-201ENST00000278544 DISP2A7MBM2 1401 aa16.76■□□□□ 0.27
ACER3-201ENST00000278544 DNAAF4Q8WXU2 420 aa16.76■□□□□ 0.27
ACER3-201ENST00000278544 THRAP3Q9Y2W1 955 aaKnown RBP16.76■□□□□ 0.27
ACER3-201ENST00000278544 LRRC37A3O60309 1634 aa16.76■□□□□ 0.27
ACER3-201ENST00000278544 FAM177BA6PVY3 158 aa16.76■□□□□ 0.27
ACER3-201ENST00000278544 TRPC5Q9UL62 973 aaPredicted RBP16.76■□□□□ 0.27
ACER3-201ENST00000278544 PTPRCP08575 1304 aa16.76■□□□□ 0.27
ACER3-201ENST00000278544 ATP6V1AP38606 617 aa16.75■□□□□ 0.27
ACER3-201ENST00000278544 MYD88Q99836 296 aa16.75■□□□□ 0.27
ACER3-201ENST00000278544 DDX21Q9NR30 783 aaKnown RBP eCLIP16.75■□□□□ 0.27
ACER3-201ENST00000278544 ABCC6O95255 1503 aa16.75■□□□□ 0.27
ACER3-201ENST00000278544 NBPF7P0C2Y1 421 aaPredicted RBP16.75■□□□□ 0.27
ACER3-201ENST00000278544 RGS12O14924 1447 aa16.74■□□□□ 0.27
ACER3-201ENST00000278544 BRPF1P55201 1214 aaPredicted RBP16.74■□□□□ 0.27
ACER3-201ENST00000278544 HEG1Q9ULI3 1381 aa16.74■□□□□ 0.27
ACER3-201ENST00000278544 SCN11AQ9UI33 1791 aa16.74■□□□□ 0.27
ACER3-201ENST00000278544 BARGINQ6ZT62 677 aa16.74■□□□□ 0.27
ACER3-201ENST00000278544 PARP4Q9UKK3 1724 aaKnown RBP16.74■□□□□ 0.27
ACER3-201ENST00000278544 SRCIN1Q9C0H9 1055 aa16.74■□□□□ 0.27
ACER3-201ENST00000278544 TBC1D2BQ9UPU7 963 aa16.74■□□□□ 0.27
ACER3-201ENST00000278544 LRRFIP2Q9Y608 721 aaKnown RBP16.74■□□□□ 0.27
ACER3-201ENST00000278544 LNPKQ9C0E8 428 aa16.73■□□□□ 0.27
ACER3-201ENST00000278544 CDCA7Q9BWT1 371 aaPredicted RBP16.73■□□□□ 0.27
ACER3-201ENST00000278544 C9orf78Q9NZ63 289 aaPredicted RBP16.73■□□□□ 0.27
ACER3-201ENST00000278544 ZBTB1Q9Y2K1 713 aa16.73■□□□□ 0.27
ACER3-201ENST00000278544 TNS2Q63HR2 1409 aa16.73■□□□□ 0.27
ACER3-201ENST00000278544 INTS3Q68E01 1043 aaKnown RBP16.73■□□□□ 0.27
ACER3-201ENST00000278544 CENPQQ7L2Z9 268 aaPredicted RBP16.73■□□□□ 0.27
ACER3-201ENST00000278544 SIRT2Q8IXJ6 389 aa16.73■□□□□ 0.27
ACER3-201ENST00000278544 RWDD1Q9H446 243 aaPredicted RBP16.73■□□□□ 0.27
ACER3-201ENST00000278544 HYPKQ9NX55 129 aa16.73■□□□□ 0.27
ACER3-201ENST00000278544 ANKRD13DQ6ZTN6 518 aa16.72■□□□□ 0.27
ACER3-201ENST00000278544 GPTP24298 496 aa16.72■□□□□ 0.27
ACER3-201ENST00000278544 NPM2Q86SE8 214 aaKnown RBP16.72■□□□□ 0.27
ACER3-201ENST00000278544 PKD1L3Q7Z443 1732 aa16.72■□□□□ 0.27
ACER3-201ENST00000278544 HOXB7P09629 217 aa16.71■□□□□ 0.27
ACER3-201ENST00000278544 CCDC85AQ96PX6 553 aaPredicted RBP16.71■□□□□ 0.27
ACER3-201ENST00000278544 PDZRN3Q9UPQ7 1066 aa16.71■□□□□ 0.27
ACER3-201ENST00000278544 KDM2BQ8NHM5 1336 aa16.71■□□□□ 0.27
ACER3-201ENST00000278544 ADCY9O60503 1353 aa16.71■□□□□ 0.27
ACER3-201ENST00000278544 ANKRD45Q5TZF3 282 aa16.71■□□□□ 0.27
ACER3-201ENST00000278544 USP44Q9H0E7 712 aa16.71■□□□□ 0.27
ACER3-201ENST00000278544 CCT4P50991 539 aaKnown RBP16.7■□□□□ 0.26
ACER3-201ENST00000278544 KSR2Q6VAB6 950 aa16.7■□□□□ 0.26
ACER3-201ENST00000278544 SMARCA5O60264 1052 aaPredicted RBP16.7■□□□□ 0.26
ACER3-201ENST00000278544 TRIM37O94972 964 aa16.7■□□□□ 0.26
ACER3-201ENST00000278544 UBTFL1P0CB47 393 aaPredicted RBP16.7■□□□□ 0.26
ACER3-201ENST00000278544 LOC102724428A0A0B4J2F2 783 aa16.7■□□□□ 0.26
ACER3-201ENST00000278544 SIK1P57059 783 aa16.7■□□□□ 0.26
ACER3-201ENST00000278544 EXOC6BQ9Y2D4 811 aa16.69■□□□□ 0.26
ACER3-201ENST00000278544 STARD3NLO95772 234 aa16.69■□□□□ 0.26
ACER3-201ENST00000278544 DDX58O95786 925 aaKnown RBP16.69■□□□□ 0.26
ACER3-201ENST00000278544 ITPK1Q13572 414 aa16.69■□□□□ 0.26
ACER3-201ENST00000278544 BEND3Q5T5X7 828 aa16.69■□□□□ 0.26
ACER3-201ENST00000278544 KDM3BQ7LBC6 1761 aa16.69■□□□□ 0.26
ACER3-201ENST00000278544 SHANK3Q9BYB0 1731 aa16.69■□□□□ 0.26
ACER3-201ENST00000278544 BCL9O00512 1426 aa16.69■□□□□ 0.26
ACER3-201ENST00000278544 NRAPQ86VF7 1730 aa16.68■□□□□ 0.26
ACER3-201ENST00000278544 PNMA6EA0A0J9YXQ4 647 aa16.68■□□□□ 0.26
ACER3-201ENST00000278544 TOGARAM1Q9Y4F4 1720 aa16.68■□□□□ 0.26
ACER3-201ENST00000278544 TSHZ2Q9NRE2 1034 aa16.67■□□□□ 0.26
ACER3-201ENST00000278544 CHMP3Q9Y3E7 222 aa16.67■□□□□ 0.26
ACER3-201ENST00000278544 IGKV5-2P06315 115 aa16.67■□□□□ 0.26
ACER3-201ENST00000278544 NEXNQ0ZGT2 675 aa16.67■□□□□ 0.26
ACER3-201ENST00000278544 PALLDQ8WX93 1383 aa16.67■□□□□ 0.26
ACER3-201ENST00000278544 GNAI2P04899 355 aa16.66■□□□□ 0.26
ACER3-201ENST00000278544 UBE3BQ7Z3V4 1068 aa16.66■□□□□ 0.26
ACER3-201ENST00000278544 PHF14O94880 888 aa16.66■□□□□ 0.26
ACER3-201ENST00000278544 CEP85Q6P2H3 762 aa16.66■□□□□ 0.26
ACER3-201ENST00000278544 SYNE4Q8N205 404 aa16.66■□□□□ 0.26
ACER3-201ENST00000278544 C5P01031 1676 aa16.66■□□□□ 0.26
ACER3-201ENST00000278544 KLHDC4Q8TBB5 520 aa16.66■□□□□ 0.26
ACER3-201ENST00000278544 HLFQ16534 295 aa16.65■□□□□ 0.26
ACER3-201ENST00000278544 C16orf71Q8IYS4 520 aaPredicted RBP16.65■□□□□ 0.26
ACER3-201ENST00000278544 CYP19A1P11511 503 aaPredicted RBP16.65■□□□□ 0.26
ACER3-201ENST00000278544 BICDL1Q6ZP65 573 aa16.65■□□□□ 0.26
ACER3-201ENST00000278544 CRKLP46109 303 aaKnown RBP16.64■□□□□ 0.25
ACER3-201ENST00000278544 KRT27Q7Z3Y8 459 aa16.64■□□□□ 0.25
ACER3-201ENST00000278544 LRP10Q7Z4F1 713 aa16.64■□□□□ 0.25
ACER3-201ENST00000278544 SIL1Q9H173 461 aa16.64■□□□□ 0.25
ACER3-201ENST00000278544 SIPA1L3O60292 1781 aaPredicted RBP16.64■□□□□ 0.25
ACER3-201ENST00000278544 PA2G4Q9UQ80 394 aaKnown RBP16.64■□□□□ 0.25
ACER3-201ENST00000278544 A0A087WZG4 1122 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms