RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 NRXN2Q9P2S2 1712 aa17.16■□□□□ 0.34
CD44-203ENST00000278386 TEFQ10587 303 aa17.16■□□□□ 0.34
CD44-203ENST00000278386 ARHGAP27Q6ZUM4 889 aa17.16■□□□□ 0.34
CD44-203ENST00000278386 GAS2L2Q8NHY3 880 aa17.16■□□□□ 0.34
CD44-203ENST00000278386 CFAP53Q96M91 514 aa17.15■□□□□ 0.34
CD44-203ENST00000278386 GNAT3A8MTJ3 354 aa17.14■□□□□ 0.33
CD44-203ENST00000278386 POLRMTO00411 1230 aaKnown RBP17.14■□□□□ 0.33
CD44-203ENST00000278386 VSIG10Q8N0Z9 540 aa17.14■□□□□ 0.33
CD44-203ENST00000278386 PIM2Q9P1W9 311 aa17.14■□□□□ 0.33
CD44-203ENST00000278386 CANXP27824 592 aaKnown RBP17.13■□□□□ 0.33
CD44-203ENST00000278386 SBF1O95248 1867 aa17.13■□□□□ 0.33
CD44-203ENST00000278386 DALRD3Q5D0E6 543 aaKnown RBP17.12■□□□□ 0.33
CD44-203ENST00000278386 NARFQ9UHQ1 456 aa17.12■□□□□ 0.33
CD44-203ENST00000278386 BCORQ6W2J9 1755 aa17.12■□□□□ 0.33
CD44-203ENST00000278386 STARD3NLO95772 234 aa17.11■□□□□ 0.33
CD44-203ENST00000278386 KCNA3P22001 575 aa17.11■□□□□ 0.33
CD44-203ENST00000278386 CHRNA5P30532 468 aa17.11■□□□□ 0.33
CD44-203ENST00000278386 PRKAR2BP31323 418 aa17.11■□□□□ 0.33
CD44-203ENST00000278386 ZNF330Q9Y3S2 320 aaPredicted RBP17.11■□□□□ 0.33
CD44-203ENST00000278386 CACNA1SQ13698 1873 aa17.11■□□□□ 0.33
CD44-203ENST00000278386 HEG1Q9ULI3 1381 aa17.11■□□□□ 0.33
CD44-203ENST00000278386 TM4SF1P30408 202 aa17.1■□□□□ 0.33
CD44-203ENST00000278386 NFIXQ14938 502 aa17.1■□□□□ 0.33
CD44-203ENST00000278386 NUDCQ9Y266 331 aa17.1■□□□□ 0.33
CD44-203ENST00000278386 CCDC88AQ3V6T2 1871 aa17.1■□□□□ 0.33
CD44-203ENST00000278386 ANKRD31Q8N7Z5 1873 aa17.1■□□□□ 0.33
CD44-203ENST00000278386 ZNF790Q6PG37 636 aa17.09■□□□□ 0.33
CD44-203ENST00000278386 IL17REQ8NFR9 667 aa17.09■□□□□ 0.33
CD44-203ENST00000278386 ZNF496Q96IT1 587 aaPredicted RBP17.09■□□□□ 0.33
CD44-203ENST00000278386 RSPH6AQ9H0K4 717 aa17.09■□□□□ 0.33
CD44-203ENST00000278386 TNRC6CQ9HCJ0 1690 aaKnown RBP17.09■□□□□ 0.33
CD44-203ENST00000278386 TIAM2Q8IVF5 1701 aa17.09■□□□□ 0.33
CD44-203ENST00000278386 DLG5Q8TDM6 1919 aa17.08■□□□□ 0.33
CD44-203ENST00000278386 COL11A2P13942 1736 aaPredicted RBP17.08■□□□□ 0.32
CD44-203ENST00000278386 KIF3CO14782 793 aa17.08■□□□□ 0.32
CD44-203ENST00000278386 C9orf131Q5VYM1 1079 aa17.08■□□□□ 0.32
CD44-203ENST00000278386 BICDL1Q6ZP65 573 aa17.08■□□□□ 0.32
CD44-203ENST00000278386 CEMIPQ8WUJ3 1361 aa17.07■□□□□ 0.32
CD44-203ENST00000278386 CEP350Q5VT06 3117 aa17.07■□□□□ 0.32
CD44-203ENST00000278386 A0A087WZG4 1122 aa17.07■□□□□ 0.32
CD44-203ENST00000278386 SERPINB2P05120 415 aa17.07■□□□□ 0.32
CD44-203ENST00000278386 U2AF1L5P0DN76 240 aaPredicted RBP17.07■□□□□ 0.32
CD44-203ENST00000278386 HSPA6P17066 643 aa17.07■□□□□ 0.32
CD44-203ENST00000278386 U2AF1Q01081 240 aaKnown RBP eCLIP17.07■□□□□ 0.32
CD44-203ENST00000278386 FMNL2Q96PY5 1086 aa17.07■□□□□ 0.32
CD44-203ENST00000278386 BCL2L12Q9HB09 334 aa17.07■□□□□ 0.32
CD44-203ENST00000278386 CARMIL3Q8ND23 1372 aa17.06■□□□□ 0.32
CD44-203ENST00000278386 BTBD11A6QL63 1104 aa17.06■□□□□ 0.32
CD44-203ENST00000278386 PPP2R1AP30153 589 aa17.06■□□□□ 0.32
CD44-203ENST00000278386 NPM2Q86SE8 214 aaKnown RBP17.06■□□□□ 0.32
CD44-203ENST00000278386 PHACTR3Q96KR7 559 aa17.06■□□□□ 0.32
CD44-203ENST00000278386 TEX13AQ9BXU3 409 aaPredicted RBP17.06■□□□□ 0.32
CD44-203ENST00000278386 RNF181Q9P0P0 153 aa17.06■□□□□ 0.32
CD44-203ENST00000278386 LAMB4A4D0S4 1761 aa17.06■□□□□ 0.32
CD44-203ENST00000278386 EIF5P55010 431 aaKnown RBP17.05■□□□□ 0.32
CD44-203ENST00000278386 RTF1Q92541 710 aaKnown RBP17.05■□□□□ 0.32
CD44-203ENST00000278386 NMRK2Q9NPI5 230 aa17.04■□□□□ 0.32
CD44-203ENST00000278386 RASSF7Q02833 373 aa17.03■□□□□ 0.32
CD44-203ENST00000278386 TBC1D9BQ66K14 1250 aa17.03■□□□□ 0.32
CD44-203ENST00000278386 C2CD5Q86YS7 1000 aa17.03■□□□□ 0.32
CD44-203ENST00000278386 TBC1D2BQ9UPU7 963 aa17.03■□□□□ 0.32
CD44-203ENST00000278386 WDR90Q96KV7 1748 aa17.02■□□□□ 0.32
CD44-203ENST00000278386 NPHP1O15259 732 aa17.02■□□□□ 0.32
CD44-203ENST00000278386 KCNQ3O43525 872 aa17.02■□□□□ 0.32
CD44-203ENST00000278386 IL6STP40189 918 aaPredicted RBP17.02■□□□□ 0.32
CD44-203ENST00000278386 MCM10Q7L590 875 aa17.02■□□□□ 0.32
CD44-203ENST00000278386 C16orf71Q8IYS4 520 aaPredicted RBP17.02■□□□□ 0.32
CD44-203ENST00000278386 ARFGEF2Q9Y6D5 1785 aa17.02■□□□□ 0.31
CD44-203ENST00000278386 KDM2BQ8NHM5 1336 aa17.01■□□□□ 0.31
CD44-203ENST00000278386 A1BGP04217 495 aa17.01■□□□□ 0.31
CD44-203ENST00000278386 TTLL6Q8N841 843 aa17.01■□□□□ 0.31
CD44-203ENST00000278386 KDM3BQ7LBC6 1761 aa17.01■□□□□ 0.31
CD44-203ENST00000278386 DICER1Q9UPY3 1922 aaKnown RBP17■□□□□ 0.31
CD44-203ENST00000278386 H0YIN7 160 aa17■□□□□ 0.31
CD44-203ENST00000278386 TOMM70O94826 608 aa17■□□□□ 0.31
CD44-203ENST00000278386 FER1L6Q2WGJ9 1857 aa17■□□□□ 0.31
CD44-203ENST00000278386 NEFMP07197 916 aa16.99■□□□□ 0.31
CD44-203ENST00000278386 PIP4K2AP48426 406 aaPredicted RBP16.99■□□□□ 0.31
CD44-203ENST00000278386 DCTN1Q14203 1278 aa16.99■□□□□ 0.31
CD44-203ENST00000278386 DZIP3Q86Y13 1208 aaKnown RBP16.99■□□□□ 0.31
CD44-203ENST00000278386 PRR5LQ6MZQ0 368 aa16.98■□□□□ 0.31
CD44-203ENST00000278386 CCDC24Q8N4L8 307 aa16.98■□□□□ 0.31
CD44-203ENST00000278386 CNBD1Q8NA66 436 aa16.98■□□□□ 0.31
CD44-203ENST00000278386 ZNF622Q969S3 477 aaKnown RBP eCLIP16.98■□□□□ 0.31
CD44-203ENST00000278386 PRAMEF22A3QJZ6 481 aa16.97■□□□□ 0.31
CD44-203ENST00000278386 CAMTA2O94983 1202 aa16.97■□□□□ 0.31
CD44-203ENST00000278386 LMNB1P20700 586 aa16.97■□□□□ 0.31
CD44-203ENST00000278386 PDE6BP35913 854 aa16.97■□□□□ 0.31
CD44-203ENST00000278386 SLX4Q8IY92 1834 aa16.96■□□□□ 0.31
CD44-203ENST00000278386 SNRPA1P09661 255 aaKnown RBP16.96■□□□□ 0.31
CD44-203ENST00000278386 APLP1P51693 650 aa16.96■□□□□ 0.31
CD44-203ENST00000278386 ST5P78524 1137 aa16.96■□□□□ 0.31
CD44-203ENST00000278386 SETDB2Q96T68 719 aa16.96■□□□□ 0.31
CD44-203ENST00000278386 ZNF219Q9P2Y4 722 aaPredicted RBP16.96■□□□□ 0.31
CD44-203ENST00000278386 USP16Q9Y5T5 823 aa16.96■□□□□ 0.31
CD44-203ENST00000278386 ZC3H4Q9UPT8 1303 aaKnown RBP16.96■□□□□ 0.3
CD44-203ENST00000278386 RBM46Q8TBY0 533 aaKnown RBP16.95■□□□□ 0.3
CD44-203ENST00000278386 BRIP1Q9BX63 1249 aa16.95■□□□□ 0.3
CD44-203ENST00000278386 PDZRN3Q9UPQ7 1066 aa16.95■□□□□ 0.3
CD44-203ENST00000278386 HTATSF1O43719 755 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms