RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 PPP6R1Q9UPN7 881 aa13.61□□□□□ -0.23
VPS33A-201ENST00000267199 PPIP5K1Q6PFW1 1433 aa13.61□□□□□ -0.23
VPS33A-201ENST00000267199 CCDC8Q9H0W5 538 aaPredicted RBP13.61□□□□□ -0.23
VPS33A-201ENST00000267199 ZNF521Q96K83 1311 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 H0YHG0 523 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 PLEKHM2Q8IWE5 1019 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 LIMCH1Q9UPQ0 1083 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 PI4KAP2A4QPH2 592 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 TRMT2AQ8IZ69 625 aaKnown RBP13.6□□□□□ -0.23
VPS33A-201ENST00000267199 PI4KAP1Q8N8J0 262 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 RUFY1Q96T51 708 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 STX6O43752 255 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 ARHGEF5Q12774 1597 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 KIF18AQ8NI77 898 aa13.6□□□□□ -0.23
VPS33A-201ENST00000267199 SAFBQ15424 915 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS33A-201ENST00000267199 AK7Q96M32 723 aa13.59□□□□□ -0.23
VPS33A-201ENST00000267199 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS33A-201ENST00000267199 CNPY2Q9Y2B0 182 aa13.59□□□□□ -0.23
VPS33A-201ENST00000267199 V9GYY5 206 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-201ENST00000267199 CEP85Q6P2H3 762 aa13.59□□□□□ -0.23
VPS33A-201ENST00000267199 USP48Q86UV5 1035 aa13.59□□□□□ -0.23
VPS33A-201ENST00000267199 CABP4P57796 275 aa13.59□□□□□ -0.23
VPS33A-201ENST00000267199 TMCO3Q6UWJ1 677 aa13.59□□□□□ -0.23
VPS33A-201ENST00000267199 GTF2F1P35269 517 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS33A-201ENST00000267199 AXDND1Q5T1B0 1012 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-201ENST00000267199 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS33A-201ENST00000267199 FOXO3O43524 673 aa13.58□□□□□ -0.23
VPS33A-201ENST00000267199 ANKLE2Q86XL3 938 aa13.58□□□□□ -0.23
VPS33A-201ENST00000267199 CAGE1Q8TC20 777 aa13.58□□□□□ -0.23
VPS33A-201ENST00000267199 PPFIA3O75145 1194 aa13.58□□□□□ -0.24
VPS33A-201ENST00000267199 URI1O94763 535 aaPredicted RBP13.58□□□□□ -0.24
VPS33A-201ENST00000267199 C17orf53Q8N3J3 647 aaPredicted RBP13.58□□□□□ -0.24
VPS33A-201ENST00000267199 CFAP45Q9UL16 551 aa13.58□□□□□ -0.24
VPS33A-201ENST00000267199 PHF8Q9UPP1 1060 aa13.58□□□□□ -0.24
VPS33A-201ENST00000267199 SFPQP23246 707 aaKnown RBP eCLIP13.58□□□□□ -0.24
VPS33A-201ENST00000267199 KCNH5Q8NCM2 988 aa13.58□□□□□ -0.24
VPS33A-201ENST00000267199 ZNF165P49910 485 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 NAP1L1P55209 391 aaKnown RBP13.57□□□□□ -0.24
VPS33A-201ENST00000267199 CCDC186Q7Z3E2 898 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 TSC1Q92574 1164 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 DBF4Q9UBU7 674 aaPredicted RBP13.57□□□□□ -0.24
VPS33A-201ENST00000267199 ATP7AQ04656 1500 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 ERICH2A1L162 156 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 CCP110O43303 1012 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 RBM25P49756 843 aaKnown RBP13.57□□□□□ -0.24
VPS33A-201ENST00000267199 ESYT1Q9BSJ8 1104 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 ECHDC1Q9NTX5 307 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 GUCY1B3Q02153 619 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 FKBP4Q02790 459 aaKnown RBP eCLIP13.57□□□□□ -0.24
VPS33A-201ENST00000267199 GAS2L3Q86XJ1 694 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 RHPN1Q8TCX5 695 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 OTUD7AQ8TE49 926 aaPredicted RBP13.57□□□□□ -0.24
VPS33A-201ENST00000267199 MARCH6O60337 910 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 GJB2P29033 226 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 UBE2HP62256 183 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 KRT32Q14532 448 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 CFAP100Q494V2 611 aa13.57□□□□□ -0.24
VPS33A-201ENST00000267199 MTHFSDQ2M296 383 aaKnown RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 CCDC158Q5M9N0 1113 aa13.56□□□□□ -0.24
VPS33A-201ENST00000267199 TAF3Q5VWG9 929 aa13.56□□□□□ -0.24
VPS33A-201ENST00000267199 YTHDC2Q9H6S0 1430 aaKnown RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 BCORL1Q5H9F3 1711 aa13.56□□□□□ -0.24
VPS33A-201ENST00000267199 DHX16O60231 1041 aaKnown RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 CCDC94Q9BW85 323 aaPredicted RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 SCAND2PQ9GZW5 306 aaPredicted RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 TMX1Q9H3N1 280 aa13.56□□□□□ -0.24
VPS33A-201ENST00000267199 NOL7Q9UMY1 257 aaKnown RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 NPATQ14207 1427 aa13.56□□□□□ -0.24
VPS33A-201ENST00000267199 LARP1Q6PKG0 1096 aaKnown RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 VPS37DQ86XT2 251 aa13.56□□□□□ -0.24
VPS33A-201ENST00000267199 BBXQ8WY36 941 aaPredicted RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 SH2B1Q9NRF2 756 aaPredicted RBP13.56□□□□□ -0.24
VPS33A-201ENST00000267199 PLA2R1Q13018 1463 aa13.56□□□□□ -0.24
VPS33A-201ENST00000267199 ABCC1P33527 1531 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 ZFYVE9O95405 1425 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPS33A-201ENST00000267199 ATP10AO60312 1499 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 UVSSAQ2YD98 709 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 TTC39AQ5SRH9 613 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 TCEANC2Q96MN5 208 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 CCDC85AQ96PX6 553 aaPredicted RBP13.55□□□□□ -0.24
VPS33A-201ENST00000267199 PIK3R4Q99570 1358 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 HS1BP3Q53T59 392 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 CCDC102AQ96A19 550 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 ZFP91Q96JP5 570 aaPredicted RBP13.55□□□□□ -0.24
VPS33A-201ENST00000267199 CEP126Q9P2H0 1117 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 ABCA8O94911 1581 aa13.55□□□□□ -0.24
VPS33A-201ENST00000267199 RIMS2Q9UQ26 1411 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 ATP8B2P98198 1209 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 NECAB1Q8N987 351 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 MYD88Q99836 296 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 TBC1D2BQ9UPU7 963 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 SAMD9LQ8IVG5 1584 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 USP26Q9BXU7 913 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 STRN4Q9NRL3 753 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 IL13P35225 146 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 MAP3K2Q9Y2U5 619 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 DTNBO60941 627 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 AMOTQ4VCS5 1084 aa13.54□□□□□ -0.24
VPS33A-201ENST00000267199 RRP12Q5JTH9 1297 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms