RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 KDM5DQ9BY66 1539 aa19.19■□□□□ 0.66
GPC1-201ENST00000264039 SRGAP3O43295 1099 aa19.18■□□□□ 0.66
GPC1-201ENST00000264039 SIL1Q9H173 461 aa19.18■□□□□ 0.66
GPC1-201ENST00000264039 CWC15Q9P013 229 aaKnown RBP19.18■□□□□ 0.66
GPC1-201ENST00000264039 UNC5CLQ8IV45 518 aa19.18■□□□□ 0.66
GPC1-201ENST00000264039 PHF23Q9BUL5 403 aaPredicted RBP19.18■□□□□ 0.66
GPC1-201ENST00000264039 NUP160Q12769 1436 aa19.18■□□□□ 0.66
GPC1-201ENST00000264039 PDCP20941 246 aa19.17■□□□□ 0.66
GPC1-201ENST00000264039 FBXO38Q6PIJ6 1188 aa19.17■□□□□ 0.66
GPC1-201ENST00000264039 TMC6Q7Z403 805 aa19.17■□□□□ 0.66
GPC1-201ENST00000264039 DDX41Q9UJV9 622 aaKnown RBP19.17■□□□□ 0.66
GPC1-201ENST00000264039 SFPQP23246 707 aaKnown RBP eCLIP19.17■□□□□ 0.66
GPC1-201ENST00000264039 HNRNPH2P55795 449 aaKnown RBP19.17■□□□□ 0.66
GPC1-201ENST00000264039 HSP90AA4PQ58FG1 418 aa19.17■□□□□ 0.66
GPC1-201ENST00000264039 LEKR1Q6ZMV7 388 aa19.17■□□□□ 0.66
GPC1-201ENST00000264039 GNAI3P08754 354 aa19.17■□□□□ 0.66
GPC1-201ENST00000264039 IBSPP21815 317 aaPredicted RBP19.17■□□□□ 0.66
GPC1-201ENST00000264039 ZNF75DP51815 510 aa19.16■□□□□ 0.66
GPC1-201ENST00000264039 CDK19Q9BWU1 502 aa19.16■□□□□ 0.66
GPC1-201ENST00000264039 SPTLC3Q9NUV7 552 aa19.16■□□□□ 0.66
GPC1-201ENST00000264039 ZRANB1Q9UGI0 708 aa19.16■□□□□ 0.66
GPC1-201ENST00000264039 KMT5BQ4FZB7 885 aa19.16■□□□□ 0.66
GPC1-201ENST00000264039 G2E3Q7L622 706 aa19.16■□□□□ 0.66
GPC1-201ENST00000264039 PLEKHF1Q96S99 279 aa19.15■□□□□ 0.66
GPC1-201ENST00000264039 AP5Z1O43299 807 aa19.15■□□□□ 0.66
GPC1-201ENST00000264039 GPATCH3Q96I76 525 aa19.15■□□□□ 0.66
GPC1-201ENST00000264039 AK7Q96M32 723 aa19.15■□□□□ 0.66
GPC1-201ENST00000264039 NME9Q86XW9 330 aa19.14■□□□□ 0.66
GPC1-201ENST00000264039 GTF2A1P52655 376 aaPredicted RBP19.14■□□□□ 0.65
GPC1-201ENST00000264039 BLOC1S2Q6QNY1 142 aa19.14■□□□□ 0.65
GPC1-201ENST00000264039 ANKRD36BQ8N2N9 1353 aa19.14■□□□□ 0.65
GPC1-201ENST00000264039 NOS1P29475 1434 aa19.14■□□□□ 0.65
GPC1-201ENST00000264039 USP27XA6NNY8 438 aa19.14■□□□□ 0.65
GPC1-201ENST00000264039 PHACTR2O75167 634 aa19.14■□□□□ 0.65
GPC1-201ENST00000264039 MCM6Q14566 821 aa19.14■□□□□ 0.65
GPC1-201ENST00000264039 MSH6P52701 1360 aa19.14■□□□□ 0.65
GPC1-201ENST00000264039 CHMP4CQ96CF2 233 aa19.13■□□□□ 0.65
GPC1-201ENST00000264039 SCAND2PQ9GZW5 306 aaPredicted RBP19.13■□□□□ 0.65
GPC1-201ENST00000264039 TTC6Q86TZ1 520 aa19.13■□□□□ 0.65
GPC1-201ENST00000264039 SLFN14P0C7P3 912 aa19.13■□□□□ 0.65
GPC1-201ENST00000264039 CEP57L1Q8IYX8 460 aa19.13■□□□□ 0.65
GPC1-201ENST00000264039 FSD1Q9BTV5 496 aa19.13■□□□□ 0.65
GPC1-201ENST00000264039 SERPINC1P01008 464 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 CCT4P50991 539 aaKnown RBP19.12■□□□□ 0.65
GPC1-201ENST00000264039 CLASRPQ8N2M8 674 aaKnown RBP19.12■□□□□ 0.65
GPC1-201ENST00000264039 AOPEPQ8N6M6 819 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 LRRC2Q9BYS8 371 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 ANAPC15P60006 121 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 NOM1Q5C9Z4 860 aaKnown RBP19.12■□□□□ 0.65
GPC1-201ENST00000264039 ANKRD7Q92527 254 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 ZCCHC17Q9NP64 241 aaKnown RBP19.12■□□□□ 0.65
GPC1-201ENST00000264039 CDC37L1Q7L3B6 337 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 RASEFQ8IZ41 740 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 CCDC102AQ96A19 550 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 ERO1AQ96HE7 468 aa19.12■□□□□ 0.65
GPC1-201ENST00000264039 C9orf78Q9NZ63 289 aaPredicted RBP19.12■□□□□ 0.65
GPC1-201ENST00000264039 TARBP1Q13395 1621 aaKnown RBP19.12■□□□□ 0.65
GPC1-201ENST00000264039 PNMA6EA0A0J9YXQ4 647 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 GYS2P54840 703 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 HSP90B2PQ58FF3 399 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 DHX37Q8IY37 1157 aaKnown RBP19.11■□□□□ 0.65
GPC1-201ENST00000264039 NAT10Q9H0A0 1025 aaKnown RBP19.11■□□□□ 0.65
GPC1-201ENST00000264039 RASSF4Q9H2L5 321 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 DDX19AQ9NUU7 478 aaKnown RBP19.11■□□□□ 0.65
GPC1-201ENST00000264039 RAPGEF6Q8TEU7 1601 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 PTPRTO14522 1441 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 CCDC171Q6TFL3 1326 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 PPP6R1Q9UPN7 881 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 SNX14Q9Y5W7 946 aa19.11■□□□□ 0.65
GPC1-201ENST00000264039 PRDM15P57071 1507 aaPredicted RBP19.1■□□□□ 0.65
GPC1-201ENST00000264039 SEC31AO94979 1220 aaKnown RBP19.1■□□□□ 0.65
GPC1-201ENST00000264039 LARGE1O95461 756 aa19.1■□□□□ 0.65
GPC1-201ENST00000264039 CUL4AQ13619 759 aa19.1■□□□□ 0.65
GPC1-201ENST00000264039 RNF20Q5VTR2 975 aa19.1■□□□□ 0.65
GPC1-201ENST00000264039 MRVI1Q9Y6F6 885 aa19.1■□□□□ 0.65
GPC1-201ENST00000264039 ANKRD65E5RJM6 399 aa19.1■□□□□ 0.65
GPC1-201ENST00000264039 TAF7LQ5H9L4 462 aa19.1■□□□□ 0.65
GPC1-201ENST00000264039 POLKQ9UBT6 870 aa19.1■□□□□ 0.65
GPC1-201ENST00000264039 NR1I2O75469 434 aa19.09■□□□□ 0.65
GPC1-201ENST00000264039 CFAP100Q494V2 611 aa19.09■□□□□ 0.65
GPC1-201ENST00000264039 RUFY3Q7L099 469 aa19.09■□□□□ 0.65
GPC1-201ENST00000264039 TSPYL1Q9H0U9 437 aa19.09■□□□□ 0.65
GPC1-201ENST00000264039 WAPLQ7Z5K2 1190 aa19.09■□□□□ 0.65
GPC1-201ENST00000264039 ABCC4O15439 1325 aa19.08■□□□□ 0.65
GPC1-201ENST00000264039 PTPN21Q16825 1174 aa19.08■□□□□ 0.65
GPC1-201ENST00000264039 CCDC144BQ3MJ40 725 aa19.08■□□□□ 0.65
GPC1-201ENST00000264039 CCDC144CPQ8IYA2 1237 aa19.08■□□□□ 0.65
GPC1-201ENST00000264039 ATP10BO94823 1461 aa19.08■□□□□ 0.65
GPC1-201ENST00000264039 MLECQ14165 292 aa19.08■□□□□ 0.64
GPC1-201ENST00000264039 ZSCAN31Q96LW9 406 aaPredicted RBP19.08■□□□□ 0.64
GPC1-201ENST00000264039 CEP170Q5SW79 1584 aa19.08■□□□□ 0.64
GPC1-201ENST00000264039 MTMR6Q9Y217 621 aa19.08■□□□□ 0.64
GPC1-201ENST00000264039 SYNMO15061 1565 aa19.07■□□□□ 0.64
GPC1-201ENST00000264039 TRPM1Q7Z4N2 1603 aa19.07■□□□□ 0.64
GPC1-201ENST00000264039 LMOD1P29536 600 aaPredicted RBP19.07■□□□□ 0.64
GPC1-201ENST00000264039 CCAR1Q8IX12 1150 aaKnown RBP19.07■□□□□ 0.64
GPC1-201ENST00000264039 RNF216Q9NWF9 866 aaPredicted RBP19.07■□□□□ 0.64
GPC1-201ENST00000264039 PSMA5P28066 241 aa19.07■□□□□ 0.64
GPC1-201ENST00000264039 AMPHP49418 695 aa19.07■□□□□ 0.64
GPC1-201ENST00000264039 LARP1Q6PKG0 1096 aaKnown RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms