RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 MAP7D1Q3KQU3 841 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 BBXQ8WY36 941 aaPredicted RBP13.14□□□□□ -0.31
PTPN4-201ENST00000263708 KRT32Q14532 448 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 RPGRQ92834 1020 aaKnown RBP13.14□□□□□ -0.31
PTPN4-201ENST00000263708 BAG4O95429 457 aaKnown RBP13.14□□□□□ -0.31
PTPN4-201ENST00000263708 TRERF1Q96PN7 1200 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 UTP14AQ9BVJ6 771 aaKnown RBP13.14□□□□□ -0.31
PTPN4-201ENST00000263708 ATP2C2O75185 946 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 SLC4A8Q2Y0W8 1093 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 TMEM132EQ6IEE7 984 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC63Q8NA47 563 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 MTIF2P46199 727 aaKnown RBP13.13□□□□□ -0.31
PTPN4-201ENST00000263708 FAM69CQ0P6D2 419 aa13.13□□□□□ -0.31
PTPN4-201ENST00000263708 PPP6R1Q9UPN7 881 aa13.13□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC6Q16204 474 aa13.13□□□□□ -0.31
PTPN4-201ENST00000263708 SRCIN1Q9C0H9 1055 aa13.13□□□□□ -0.31
PTPN4-201ENST00000263708 ANAPC4Q9UJX5 808 aa13.13□□□□□ -0.31
PTPN4-201ENST00000263708 MPHOSPH6Q99547 160 aaKnown RBP13.13□□□□□ -0.31
PTPN4-201ENST00000263708 SYCE3A1L190 88 aa13.13□□□□□ -0.31
PTPN4-201ENST00000263708 YEATS4O95619 227 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 CEP112Q8N8E3 955 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 NAPBQ9H115 298 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 NLRP5P59047 1200 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC40Q4G0X9 1142 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 A0A087WZG4 1122 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 CKAP2LQ8IYA6 745 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 KIF18AQ8NI77 898 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 U3KPZ7 1027 aaPredicted RBP13.12□□□□□ -0.31
PTPN4-201ENST00000263708 KIF20AO95235 890 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 SMC1BQ8NDV3 1235 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 CTCFLQ8NI51 663 aaPredicted RBP13.12□□□□□ -0.31
PTPN4-201ENST00000263708 PHAXQ9H814 394 aaKnown RBP13.12□□□□□ -0.31
PTPN4-201ENST00000263708 TTC21AQ8NDW8 1320 aa13.12□□□□□ -0.31
PTPN4-201ENST00000263708 TTC36A6NLP5 189 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 DPH6Q7L8W6 267 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 TSR2Q969E8 191 aaKnown RBP13.11□□□□□ -0.31
PTPN4-201ENST00000263708 ZSCAN31Q96LW9 406 aaPredicted RBP13.11□□□□□ -0.31
PTPN4-201ENST00000263708 JADE2Q9NQC1 790 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 EXOSC9Q06265 439 aaKnown RBP13.11□□□□□ -0.31
PTPN4-201ENST00000263708 STARD3NLO95772 234 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 NOL3O60936 208 aaKnown RBP13.11□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC174Q6PII3 467 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 SLC12A7Q9Y666 1083 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 GUCY1B3Q02153 619 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 CALML4Q96GE6 196 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 SSRP1Q08945 709 aaKnown RBP13.11□□□□□ -0.31
PTPN4-201ENST00000263708 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTPN4-201ENST00000263708 V9GYY5 206 aaPredicted RBP13.11□□□□□ -0.31
PTPN4-201ENST00000263708 MYO1BO43795 1136 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 SULT6B1Q6IMI4 303 aa13.11□□□□□ -0.31
PTPN4-201ENST00000263708 SNX16P57768 344 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC144CPQ8IYA2 1237 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 TBC1D5Q92609 795 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC194A0A1B0GVG4 234 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 CEP135Q66GS9 1140 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 CECR2Q9BXF3 1484 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC83Q8IWF9 413 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 SMARCC1Q92922 1105 aaPredicted RBP13.1□□□□□ -0.31
PTPN4-201ENST00000263708 VAT1LQ9HCJ6 419 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 TRMT1Q9NXH9 659 aaKnown RBP13.1□□□□□ -0.31
PTPN4-201ENST00000263708 CLIP2Q9UDT6 1046 aa13.1□□□□□ -0.31
PTPN4-201ENST00000263708 STXBP4Q6ZWJ1 553 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC196A0A1B0GTZ2 297 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 ECM2O94769 699 aaPredicted RBP13.09□□□□□ -0.31
PTPN4-201ENST00000263708 KIF2AO00139 706 aaPredicted RBP13.09□□□□□ -0.31
PTPN4-201ENST00000263708 PNISRQ8TF01 805 aaKnown RBP13.09□□□□□ -0.31
PTPN4-201ENST00000263708 GTPBP4Q9BZE4 634 aaKnown RBP13.09□□□□□ -0.31
PTPN4-201ENST00000263708 PRDM11Q9NQV5 511 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 RPUSD2Q8IZ73 545 aaKnown RBP13.09□□□□□ -0.31
PTPN4-201ENST00000263708 CCDC155Q8N6L0 562 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 C8orf76Q96K31 380 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 IL1RAPL2Q9NP60 686 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 KIAA0753Q2KHM9 967 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 CNNM3Q8NE01 707 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 SATB1Q01826 763 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 TAF12Q16514 161 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 IQCA1Q86XH1 822 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 ANO10Q9NW15 660 aa13.09□□□□□ -0.31
PTPN4-201ENST00000263708 SEPT6Q14141 434 aa13.08□□□□□ -0.31
PTPN4-201ENST00000263708 HSF2BPO75031 334 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 GSTA5Q7RTV2 222 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 CATIPQ7Z7H3 387 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 NUTM1Q86Y26 1132 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 TCP11L2Q8N4U5 519 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 KIF4AO95239 1232 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 AKAP2Q9Y2D5 859 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 FERMT3Q86UX7 667 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 SLF2Q8IX21 1173 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 PHACTR2O75167 634 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 GJC1P36383 396 aa13.08□□□□□ -0.32
PTPN4-201ENST00000263708 SMARCA2P51531 1590 aa13.07□□□□□ -0.32
PTPN4-201ENST00000263708 XPCQ01831 940 aaPredicted RBP13.07□□□□□ -0.32
PTPN4-201ENST00000263708 ADAMTS8Q9UP79 889 aa13.07□□□□□ -0.32
PTPN4-201ENST00000263708 DDX12PQ92771 950 aa13.07□□□□□ -0.32
PTPN4-201ENST00000263708 GTF2F1P35269 517 aaKnown RBP eCLIP13.07□□□□□ -0.32
PTPN4-201ENST00000263708 AMPD3Q01432 767 aa13.07□□□□□ -0.32
PTPN4-201ENST00000263708 TXNDC2Q86VQ3 553 aa13.07□□□□□ -0.32
PTPN4-201ENST00000263708 PFDN4Q9NQP4 134 aa13.07□□□□□ -0.32
PTPN4-201ENST00000263708 TMEM110-MUSTN1A8MSY1 372 aa13.07□□□□□ -0.32
PTPN4-201ENST00000263708 MKRN1Q9UHC7 482 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms