RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 COL3A1P02461 1466 aaPredicted RBP14.09□□□□□ -0.15
VPS50-201ENST00000251739 PER1O15534 1290 aaPredicted RBP14.08□□□□□ -0.16
VPS50-201ENST00000251739 SULT6B1Q6IMI4 303 aa14.08□□□□□ -0.16
VPS50-201ENST00000251739 RTCBQ9Y3I0 505 aaKnown RBP14.08□□□□□ -0.16
VPS50-201ENST00000251739 SIPA1L3O60292 1781 aaPredicted RBP14.07□□□□□ -0.16
VPS50-201ENST00000251739 KCPQ6ZWJ8 1503 aa14.07□□□□□ -0.16
VPS50-201ENST00000251739 RPS6KA4O75676 772 aa14.07□□□□□ -0.16
VPS50-201ENST00000251739 MTHFSP49914 203 aa14.07□□□□□ -0.16
VPS50-201ENST00000251739 CABP4P57796 275 aa14.07□□□□□ -0.16
VPS50-201ENST00000251739 GYS1P13807 737 aa14.06□□□□□ -0.16
VPS50-201ENST00000251739 C1orf141Q5JVX7 400 aa14.06□□□□□ -0.16
VPS50-201ENST00000251739 TRAPPC3LQ5T215 181 aa14.06□□□□□ -0.16
VPS50-201ENST00000251739 NLGN1Q8N2Q7 840 aa14.06□□□□□ -0.16
VPS50-201ENST00000251739 NFATC2IPQ8NCF5 419 aa14.06□□□□□ -0.16
VPS50-201ENST00000251739 ARHGEF1Q92888 912 aaKnown RBP14.06□□□□□ -0.16
VPS50-201ENST00000251739 NPC1L1Q9UHC9 1359 aa14.06□□□□□ -0.16
VPS50-201ENST00000251739 NRXN2Q9P2S2 1712 aa14.05□□□□□ -0.16
VPS50-201ENST00000251739 SENP3-EIF4A1A0A087X0R7 540 aa14.05□□□□□ -0.16
VPS50-201ENST00000251739 AFDNP55196 1824 aaKnown RBP14.04□□□□□ -0.16
VPS50-201ENST00000251739 PTCD1O75127 700 aaKnown RBP14.04□□□□□ -0.16
VPS50-201ENST00000251739 CRKLP46109 303 aaKnown RBP14.04□□□□□ -0.16
VPS50-201ENST00000251739 AKAP4Q5JQC9 854 aa14.04□□□□□ -0.16
VPS50-201ENST00000251739 USP42Q9H9J4 1324 aaKnown RBP14.04□□□□□ -0.16
VPS50-201ENST00000251739 TGFB2P61812 414 aa14.03□□□□□ -0.16
VPS50-201ENST00000251739 SLC52A2Q9HAB3 445 aa14.03□□□□□ -0.16
VPS50-201ENST00000251739 WWC3Q9ULE0 1092 aa14.03□□□□□ -0.16
VPS50-201ENST00000251739 DLEC1Q9Y238 1755 aa14.03□□□□□ -0.16
VPS50-201ENST00000251739 RASEFQ8IZ41 740 aa14.02□□□□□ -0.17
VPS50-201ENST00000251739 RFC4P35249 363 aa14.01□□□□□ -0.17
VPS50-201ENST00000251739 INTS5Q6P9B9 1019 aaKnown RBP14.01□□□□□ -0.17
VPS50-201ENST00000251739 LGR6Q9HBX8 967 aa14.01□□□□□ -0.17
VPS50-201ENST00000251739 SBF1O95248 1867 aa14.01□□□□□ -0.17
VPS50-201ENST00000251739 SOS1Q07889 1333 aaPredicted RBP14□□□□□ -0.17
VPS50-201ENST00000251739 RNMTO43148 476 aaKnown RBP14□□□□□ -0.17
VPS50-201ENST00000251739 DDR1Q08345 913 aa14□□□□□ -0.17
VPS50-201ENST00000251739 CCDC87Q9NVE4 849 aa14□□□□□ -0.17
VPS50-201ENST00000251739 SRP68Q9UHB9 627 aaKnown RBP14□□□□□ -0.17
VPS50-201ENST00000251739 SCN7AQ01118 1682 aa13.99□□□□□ -0.17
VPS50-201ENST00000251739 A0A0G2JLW4 131 aa13.99□□□□□ -0.17
VPS50-201ENST00000251739 HMOX1P09601 288 aa13.99□□□□□ -0.17
VPS50-201ENST00000251739 KCNA3P22001 575 aa13.99□□□□□ -0.17
VPS50-201ENST00000251739 DNAJC10Q8IXB1 793 aa13.99□□□□□ -0.17
VPS50-201ENST00000251739 GPBP1L1Q9HC44 474 aaPredicted RBP13.99□□□□□ -0.17
VPS50-201ENST00000251739 DIAPH1O60610 1272 aaKnown RBP13.98□□□□□ -0.17
VPS50-201ENST00000251739 CYP19A1P11511 503 aaPredicted RBP13.98□□□□□ -0.17
VPS50-201ENST00000251739 DPEP1P16444 411 aa13.98□□□□□ -0.17
VPS50-201ENST00000251739 MTHFSDQ2M296 383 aaKnown RBP13.98□□□□□ -0.17
VPS50-201ENST00000251739 PARP3Q9Y6F1 533 aa13.98□□□□□ -0.17
VPS50-201ENST00000251739 C19orf67A6NJJ6 358 aa13.97□□□□□ -0.17
VPS50-201ENST00000251739 CC2D1BQ5T0F9 858 aaKnown RBP13.97□□□□□ -0.17
VPS50-201ENST00000251739 COL15A1P39059 1388 aa13.96□□□□□ -0.17
VPS50-201ENST00000251739 ANKRD31Q8N7Z5 1873 aa13.96□□□□□ -0.17
VPS50-201ENST00000251739 POLRMTO00411 1230 aaKnown RBP13.96□□□□□ -0.17
VPS50-201ENST00000251739 KIF3CO14782 793 aa13.96□□□□□ -0.17
VPS50-201ENST00000251739 TM4SF1P30408 202 aa13.96□□□□□ -0.17
VPS50-201ENST00000251739 SLC39A6Q13433 755 aa13.96□□□□□ -0.17
VPS50-201ENST00000251739 VSIG10Q8N0Z9 540 aa13.96□□□□□ -0.17
VPS50-201ENST00000251739 FAM212AQ96EL1 285 aa13.96□□□□□ -0.17
VPS50-201ENST00000251739 BCS1LQ9Y276 419 aa13.96□□□□□ -0.17
VPS50-201ENST00000251739 ZNF526Q8TF50 670 aaPredicted RBP13.95□□□□□ -0.18
VPS50-201ENST00000251739 BCORQ6W2J9 1755 aa13.94□□□□□ -0.18
VPS50-201ENST00000251739 GSE1Q14687 1217 aa13.94□□□□□ -0.18
VPS50-201ENST00000251739 ZBTB1Q9Y2K1 713 aa13.94□□□□□ -0.18
VPS50-201ENST00000251739 CEMIPQ8WUJ3 1361 aa13.94□□□□□ -0.18
VPS50-201ENST00000251739 FCHSD2O94868 740 aa13.93□□□□□ -0.18
VPS50-201ENST00000251739 CD44P16070 742 aaKnown RBP13.93□□□□□ -0.18
VPS50-201ENST00000251739 USPL1Q5W0Q7 1092 aa13.93□□□□□ -0.18
VPS50-201ENST00000251739 BCL2L12Q9HB09 334 aa13.93□□□□□ -0.18
VPS50-201ENST00000251739 NARFQ9UHQ1 456 aa13.93□□□□□ -0.18
VPS50-201ENST00000251739 TNRC6CQ9HCJ0 1690 aaKnown RBP13.93□□□□□ -0.18
VPS50-201ENST00000251739 COL11A2P13942 1736 aaPredicted RBP13.93□□□□□ -0.18
VPS50-201ENST00000251739 HSPA6P17066 643 aa13.92□□□□□ -0.18
VPS50-201ENST00000251739 DCAF8Q5TAQ9 597 aa13.92□□□□□ -0.18
VPS50-201ENST00000251739 PIM2Q9P1W9 311 aa13.92□□□□□ -0.18
VPS50-201ENST00000251739 CCDC88AQ3V6T2 1871 aa13.91□□□□□ -0.18
VPS50-201ENST00000251739 ZPR1O75312 459 aa13.91□□□□□ -0.18
VPS50-201ENST00000251739 NFIXQ14938 502 aa13.91□□□□□ -0.18
VPS50-201ENST00000251739 ARHGAP27Q6ZUM4 889 aa13.91□□□□□ -0.18
VPS50-201ENST00000251739 IL17REQ8NFR9 667 aa13.91□□□□□ -0.18
VPS50-201ENST00000251739 RTN4Q9NQC3 1192 aaKnown RBP13.91□□□□□ -0.18
VPS50-201ENST00000251739 HEG1Q9ULI3 1381 aa13.91□□□□□ -0.18
VPS50-201ENST00000251739 TIAM2Q8IVF5 1701 aa13.9□□□□□ -0.18
VPS50-201ENST00000251739 CHRNA5P30532 468 aa13.9□□□□□ -0.18
VPS50-201ENST00000251739 EIF5P55010 431 aaKnown RBP13.9□□□□□ -0.18
VPS50-201ENST00000251739 DALRD3Q5D0E6 543 aaKnown RBP13.9□□□□□ -0.18
VPS50-201ENST00000251739 GAS2L2Q8NHY3 880 aa13.9□□□□□ -0.18
VPS50-201ENST00000251739 ZNF496Q96IT1 587 aaPredicted RBP13.9□□□□□ -0.18
VPS50-201ENST00000251739 TSPYL2Q9H2G4 693 aaPredicted RBP13.9□□□□□ -0.18
VPS50-201ENST00000251739 CIZ1Q9ULV3 898 aaPredicted RBP13.9□□□□□ -0.18
VPS50-201ENST00000251739 CARMIL3Q8ND23 1372 aa13.9□□□□□ -0.18
VPS50-201ENST00000251739 ARFGEF2Q9Y6D5 1785 aa13.89□□□□□ -0.19
VPS50-201ENST00000251739 GNAT3A8MTJ3 354 aa13.89□□□□□ -0.19
VPS50-201ENST00000251739 HAX1O00165 279 aa13.89□□□□□ -0.19
VPS50-201ENST00000251739 ZNF790Q6PG37 636 aa13.89□□□□□ -0.19
VPS50-201ENST00000251739 WDR90Q96KV7 1748 aa13.89□□□□□ -0.19
VPS50-201ENST00000251739 DLG5Q8TDM6 1919 aa13.88□□□□□ -0.19
VPS50-201ENST00000251739 DICER1Q9UPY3 1922 aaKnown RBP13.88□□□□□ -0.19
VPS50-201ENST00000251739 U2SURPO15042 1029 aaKnown RBP13.88□□□□□ -0.19
VPS50-201ENST00000251739 C9orf131Q5VYM1 1079 aa13.88□□□□□ -0.19
VPS50-201ENST00000251739 PHACTR3Q96KR7 559 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms