RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 DDB1Q16531 1140 aa17.87■□□□□ 0.45
SDF2-201ENST00000247020 TSHZ2Q9NRE2 1034 aa17.87■□□□□ 0.45
SDF2-201ENST00000247020 SMC5Q8IY18 1101 aa17.86■□□□□ 0.45
SDF2-201ENST00000247020 NGLY1Q96IV0 654 aa17.86■□□□□ 0.45
SDF2-201ENST00000247020 BCL9O00512 1426 aa17.85■□□□□ 0.45
SDF2-201ENST00000247020 F6X3S4 739 aa17.85■□□□□ 0.45
SDF2-201ENST00000247020 SLC4A10Q6U841 1118 aa17.85■□□□□ 0.45
SDF2-201ENST00000247020 RPAP2Q8IXW5 612 aaPredicted RBP17.85■□□□□ 0.45
SDF2-201ENST00000247020 PRAMEF22A3QJZ6 481 aa17.84■□□□□ 0.45
SDF2-201ENST00000247020 DDX58O95786 925 aaKnown RBP17.84■□□□□ 0.45
SDF2-201ENST00000247020 GNAI3P08754 354 aa17.84■□□□□ 0.45
SDF2-201ENST00000247020 PDIA6Q15084 440 aa17.84■□□□□ 0.45
SDF2-201ENST00000247020 VSIG10Q8N0Z9 540 aa17.84■□□□□ 0.45
SDF2-201ENST00000247020 DNAAF4Q8WXU2 420 aa17.84■□□□□ 0.45
SDF2-201ENST00000247020 C8orf37Q96NL8 207 aa17.84■□□□□ 0.45
SDF2-201ENST00000247020 THSD7AQ9UPZ6 1657 aa17.84■□□□□ 0.45
SDF2-201ENST00000247020 CICQ96RK0 1608 aaPredicted RBP17.84■□□□□ 0.45
SDF2-201ENST00000247020 GCC1Q96CN9 775 aa17.83■□□□□ 0.45
SDF2-201ENST00000247020 ADCY9O60503 1353 aa17.83■□□□□ 0.44
SDF2-201ENST00000247020 HSPA1LP34931 641 aa17.83■□□□□ 0.44
SDF2-201ENST00000247020 KSR2Q6VAB6 950 aa17.83■□□□□ 0.44
SDF2-201ENST00000247020 TEX13AQ9BXU3 409 aaPredicted RBP17.83■□□□□ 0.44
SDF2-201ENST00000247020 ANKRD44Q8N8A2 993 aa17.82■□□□□ 0.44
SDF2-201ENST00000247020 MEIS3Q99687 375 aa17.82■□□□□ 0.44
SDF2-201ENST00000247020 SRCIN1Q9C0H9 1055 aa17.82■□□□□ 0.44
SDF2-201ENST00000247020 CCDC9Q9Y3X0 531 aaKnown RBP17.82■□□□□ 0.44
SDF2-201ENST00000247020 ARFGEF2Q9Y6D5 1785 aa17.81■□□□□ 0.44
SDF2-201ENST00000247020 PI4KAP2A4QPH2 592 aa17.81■□□□□ 0.44
SDF2-201ENST00000247020 PI4KAP1Q8N8J0 262 aa17.81■□□□□ 0.44
SDF2-201ENST00000247020 USP16Q9Y5T5 823 aa17.81■□□□□ 0.44
SDF2-201ENST00000247020 ALDH1L1O75891 902 aa17.8■□□□□ 0.44
SDF2-201ENST00000247020 PROSER3Q2NL68 480 aa17.8■□□□□ 0.44
SDF2-201ENST00000247020 BEND3Q5T5X7 828 aa17.8■□□□□ 0.44
SDF2-201ENST00000247020 PIGBQ92521 554 aa17.8■□□□□ 0.44
SDF2-201ENST00000247020 GNAI2P04899 355 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 LRP10Q7Z4F1 713 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 C1orf115Q9H7X2 142 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 USP21Q9UK80 565 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 PDZRN3Q9UPQ7 1066 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 ZNF831Q5JPB2 1677 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 NUP188Q5SRE5 1749 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 ANXA1P04083 346 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 CEP85Q6P2H3 762 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 SIRT2Q8IXJ6 389 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 HDAC5Q9UQL6 1122 aa17.79■□□□□ 0.44
SDF2-201ENST00000247020 HMMRO75330 724 aa17.78■□□□□ 0.44
SDF2-201ENST00000247020 ATG3Q9NT62 314 aa17.78■□□□□ 0.44
SDF2-201ENST00000247020 TJP1Q07157 1748 aa17.78■□□□□ 0.44
SDF2-201ENST00000247020 AFDNP55196 1824 aaKnown RBP17.77■□□□□ 0.44
SDF2-201ENST00000247020 MEX3CQ5U5Q3 659 aaKnown RBP17.77■□□□□ 0.44
SDF2-201ENST00000247020 USP44Q9H0E7 712 aa17.77■□□□□ 0.44
SDF2-201ENST00000247020 MAP3K2Q9Y2U5 619 aa17.77■□□□□ 0.44
SDF2-201ENST00000247020 KAT6BQ8WYB5 2073 aa17.77■□□□□ 0.43
SDF2-201ENST00000247020 MARCH10Q8NA82 808 aaPredicted RBP17.76■□□□□ 0.43
SDF2-201ENST00000247020 LINS1Q8NG48 757 aa17.76■□□□□ 0.43
SDF2-201ENST00000247020 ATRNO75882 1429 aa17.75■□□□□ 0.43
SDF2-201ENST00000247020 UBTFL1P0CB47 393 aaPredicted RBP17.75■□□□□ 0.43
SDF2-201ENST00000247020 NUCB1Q02818 461 aa17.75■□□□□ 0.43
SDF2-201ENST00000247020 XAGE3Q8WTP9 111 aa17.75■□□□□ 0.43
SDF2-201ENST00000247020 DCTPP1Q9H773 170 aa17.75■□□□□ 0.43
SDF2-201ENST00000247020 PTCD1O75127 700 aaKnown RBP17.74■□□□□ 0.43
SDF2-201ENST00000247020 MYL6BP14649 208 aa17.74■□□□□ 0.43
SDF2-201ENST00000247020 NEXNQ0ZGT2 675 aa17.74■□□□□ 0.43
SDF2-201ENST00000247020 COPS6Q7L5N1 327 aa17.74■□□□□ 0.43
SDF2-201ENST00000247020 RIC3Q7Z5B4 369 aa17.74■□□□□ 0.43
SDF2-201ENST00000247020 ASAP1Q9ULH1 1129 aa17.74■□□□□ 0.43
SDF2-201ENST00000247020 RGS3P49796 1198 aa17.74■□□□□ 0.43
SDF2-201ENST00000247020 FAM98CQ17RN3 349 aaKnown RBP17.74■□□□□ 0.43
SDF2-201ENST00000247020 ANKRD13DQ6ZTN6 518 aa17.74■□□□□ 0.43
SDF2-201ENST00000247020 METTL22Q9BUU2 404 aaPredicted RBP17.74■□□□□ 0.43
SDF2-201ENST00000247020 UTYO14607 1347 aa17.73■□□□□ 0.43
SDF2-201ENST00000247020 STARD3NLO95772 234 aa17.73■□□□□ 0.43
SDF2-201ENST00000247020 PLBD2Q8NHP8 589 aa17.73■□□□□ 0.43
SDF2-201ENST00000247020 NHSQ6T4R5 1651 aa17.73■□□□□ 0.43
SDF2-201ENST00000247020 RREB1Q92766 1687 aa17.73■□□□□ 0.43
SDF2-201ENST00000247020 AFF2P51816 1311 aa17.72■□□□□ 0.43
SDF2-201ENST00000247020 PRIM1P49642 420 aaKnown RBP17.72■□□□□ 0.43
SDF2-201ENST00000247020 AIMP1Q12904 312 aaKnown RBP17.72■□□□□ 0.43
SDF2-201ENST00000247020 CHD1LQ86WJ1 897 aa17.72■□□□□ 0.43
SDF2-201ENST00000247020 NBPF26B4DH59 902 aa17.71■□□□□ 0.43
SDF2-201ENST00000247020 ATP8B2P98198 1209 aa17.71■□□□□ 0.43
SDF2-201ENST00000247020 NBPF14Q5TI25 921 aa17.71■□□□□ 0.43
SDF2-201ENST00000247020 NBPF10Q6P3W6 841 aaKnown RBP17.71■□□□□ 0.43
SDF2-201ENST00000247020 SKAP1Q86WV1 359 aa17.71■□□□□ 0.43
SDF2-201ENST00000247020 NBPF15Q8N660 670 aa17.71■□□□□ 0.43
SDF2-201ENST00000247020 TRPC5Q9UL62 973 aaPredicted RBP17.71■□□□□ 0.43
SDF2-201ENST00000247020 PDE4AP27815 886 aa17.7■□□□□ 0.42
SDF2-201ENST00000247020 SYTL4Q96C24 671 aaPredicted RBP17.7■□□□□ 0.42
SDF2-201ENST00000247020 GJD4Q96KN9 370 aaPredicted RBP17.7■□□□□ 0.42
SDF2-201ENST00000247020 BACH2Q9BYV9 841 aa17.7■□□□□ 0.42
SDF2-201ENST00000247020 RBM19Q9Y4C8 960 aaKnown RBP17.7■□□□□ 0.42
SDF2-201ENST00000247020 LRRFIP2Q9Y608 721 aaKnown RBP17.7■□□□□ 0.42
SDF2-201ENST00000247020 ONECUT3O60422 494 aaPredicted RBP17.7■□□□□ 0.42
SDF2-201ENST00000247020 FAM161AQ3B820 660 aa17.7■□□□□ 0.42
SDF2-201ENST00000247020 SMARCC1Q92922 1105 aaPredicted RBP17.7■□□□□ 0.42
SDF2-201ENST00000247020 RBM42Q9BTD8 480 aaKnown RBP17.7■□□□□ 0.42
SDF2-201ENST00000247020 COL15A1P39059 1388 aa17.69■□□□□ 0.42
SDF2-201ENST00000247020 MTX1Q13505 466 aa17.69■□□□□ 0.42
SDF2-201ENST00000247020 DNAJC10Q8IXB1 793 aa17.69■□□□□ 0.42
SDF2-201ENST00000247020 C9orf78Q9NZ63 289 aaPredicted RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms