RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 FMNL2Q96PY5 1086 aa16.43■□□□□ 0.22
HIF3A-201ENST00000244302 C1orf115Q9H7X2 142 aa16.43■□□□□ 0.22
HIF3A-201ENST00000244302 IGHDP01880 384 aa16.42■□□□□ 0.22
HIF3A-201ENST00000244302 GLI3P10071 1580 aa16.42■□□□□ 0.22
HIF3A-201ENST00000244302 RBM42Q9BTD8 480 aaKnown RBP16.42■□□□□ 0.22
HIF3A-201ENST00000244302 ABCC4O15439 1325 aa16.42■□□□□ 0.22
HIF3A-201ENST00000244302 WNK3Q9BYP7 1800 aa16.42■□□□□ 0.22
HIF3A-201ENST00000244302 SNRPA1P09661 255 aaKnown RBP16.42■□□□□ 0.22
HIF3A-201ENST00000244302 AIMP1Q12904 312 aaKnown RBP16.42■□□□□ 0.22
HIF3A-201ENST00000244302 TRPC5Q9UL62 973 aaPredicted RBP16.42■□□□□ 0.22
HIF3A-201ENST00000244302 A1BGP04217 495 aa16.41■□□□□ 0.22
HIF3A-201ENST00000244302 SEPT12Q8IYM1 358 aa16.41■□□□□ 0.22
HIF3A-201ENST00000244302 BCL9O00512 1426 aa16.4■□□□□ 0.22
HIF3A-201ENST00000244302 ATRNO75882 1429 aa16.4■□□□□ 0.22
HIF3A-201ENST00000244302 ZBTB7BO15156 539 aaPredicted RBP16.4■□□□□ 0.22
HIF3A-201ENST00000244302 HOXB7P09629 217 aa16.4■□□□□ 0.22
HIF3A-201ENST00000244302 KCNQ4P56696 695 aa16.4■□□□□ 0.22
HIF3A-201ENST00000244302 API5Q9BZZ5 524 aaKnown RBP16.4■□□□□ 0.22
HIF3A-201ENST00000244302 C5P01031 1676 aa16.4■□□□□ 0.22
HIF3A-201ENST00000244302 NBPF26B4DH59 902 aa16.39■□□□□ 0.21
HIF3A-201ENST00000244302 NBPF14Q5TI25 921 aa16.39■□□□□ 0.21
HIF3A-201ENST00000244302 NBPF10Q6P3W6 841 aaKnown RBP16.39■□□□□ 0.21
HIF3A-201ENST00000244302 DNAJC10Q8IXB1 793 aa16.39■□□□□ 0.21
HIF3A-201ENST00000244302 NBPF15Q8N660 670 aa16.39■□□□□ 0.21
HIF3A-201ENST00000244302 PI4KAP2A4QPH2 592 aa16.39■□□□□ 0.21
HIF3A-201ENST00000244302 PI4KAP1Q8N8J0 262 aa16.39■□□□□ 0.21
HIF3A-201ENST00000244302 DBF4Q9UBU7 674 aaPredicted RBP16.39■□□□□ 0.21
HIF3A-201ENST00000244302 ITGB4P16144 1822 aa16.39■□□□□ 0.21
HIF3A-201ENST00000244302 KCPQ6ZWJ8 1503 aa16.38■□□□□ 0.21
HIF3A-201ENST00000244302 LRP10Q7Z4F1 713 aa16.38■□□□□ 0.21
HIF3A-201ENST00000244302 ZBTB40Q9NUA8 1239 aa16.38■□□□□ 0.21
HIF3A-201ENST00000244302 PTPRCP08575 1304 aa16.37■□□□□ 0.21
HIF3A-201ENST00000244302 ONECUT3O60422 494 aaPredicted RBP16.37■□□□□ 0.21
HIF3A-201ENST00000244302 DDX21Q9NR30 783 aaKnown RBP eCLIP16.37■□□□□ 0.21
HIF3A-201ENST00000244302 RGS17Q9UGC6 210 aaPredicted RBP16.37■□□□□ 0.21
HIF3A-201ENST00000244302 SOS1Q07889 1333 aaPredicted RBP16.36■□□□□ 0.21
HIF3A-201ENST00000244302 COPS6Q7L5N1 327 aa16.36■□□□□ 0.21
HIF3A-201ENST00000244302 XAGE3Q8WTP9 111 aa16.36■□□□□ 0.21
HIF3A-201ENST00000244302 DDX19BQ9UMR2 479 aa16.36■□□□□ 0.21
HIF3A-201ENST00000244302 INTS3Q68E01 1043 aaKnown RBP16.36■□□□□ 0.21
HIF3A-201ENST00000244302 FBXO41Q8TF61 875 aa16.36■□□□□ 0.21
HIF3A-201ENST00000244302 MEIS3Q99687 375 aa16.36■□□□□ 0.21
HIF3A-201ENST00000244302 DOT1LQ8TEK3 1739 aa16.36■□□□□ 0.21
HIF3A-201ENST00000244302 ADCY9O60503 1353 aa16.35■□□□□ 0.21
HIF3A-201ENST00000244302 MSH5O43196 834 aa16.35■□□□□ 0.21
HIF3A-201ENST00000244302 MS4A1P11836 297 aa16.35■□□□□ 0.21
HIF3A-201ENST00000244302 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.34■□□□□ 0.21
HIF3A-201ENST00000244302 MAP3K2Q9Y2U5 619 aa16.34■□□□□ 0.21
HIF3A-201ENST00000244302 ZNF330Q9Y3S2 320 aaPredicted RBP16.34■□□□□ 0.21
HIF3A-201ENST00000244302 TTLL7Q6ZT98 887 aa16.33■□□□□ 0.21
HIF3A-201ENST00000244302 KDM2BQ8NHM5 1336 aa16.33■□□□□ 0.2
HIF3A-201ENST00000244302 SMIM5Q71RC9 77 aa16.33■□□□□ 0.2
HIF3A-201ENST00000244302 SIRT2Q8IXJ6 389 aa16.32■□□□□ 0.2
HIF3A-201ENST00000244302 HYPKQ9NX55 129 aa16.32■□□□□ 0.2
HIF3A-201ENST00000244302 THSD7AQ9UPZ6 1657 aa16.32■□□□□ 0.2
HIF3A-201ENST00000244302 UBR2Q8IWV8 1755 aa16.32■□□□□ 0.2
HIF3A-201ENST00000244302 PAPPAQ13219 1627 aa16.32■□□□□ 0.2
HIF3A-201ENST00000244302 ITPK1Q13572 414 aa16.31■□□□□ 0.2
HIF3A-201ENST00000244302 CWF19L2Q2TBE0 894 aaKnown RBP16.31■□□□□ 0.2
HIF3A-201ENST00000244302 ERICH6Q7L0X2 663 aa16.31■□□□□ 0.2
HIF3A-201ENST00000244302 DNAAF4Q8WXU2 420 aa16.31■□□□□ 0.2
HIF3A-201ENST00000244302 BEND3Q5T5X7 828 aa16.31■□□□□ 0.2
HIF3A-201ENST00000244302 POTEAQ6S8J7 498 aa16.31■□□□□ 0.2
HIF3A-201ENST00000244302 KSR2Q6VAB6 950 aa16.3■□□□□ 0.2
HIF3A-201ENST00000244302 JARID2Q92833 1246 aaPredicted RBP16.3■□□□□ 0.2
HIF3A-201ENST00000244302 LOC102724428A0A0B4J2F2 783 aa16.3■□□□□ 0.2
HIF3A-201ENST00000244302 CYP19A1P11511 503 aaPredicted RBP16.3■□□□□ 0.2
HIF3A-201ENST00000244302 ATP6V1AP38606 617 aa16.3■□□□□ 0.2
HIF3A-201ENST00000244302 SIK1P57059 783 aa16.3■□□□□ 0.2
HIF3A-201ENST00000244302 USP44Q9H0E7 712 aa16.3■□□□□ 0.2
HIF3A-201ENST00000244302 ZBTB1Q9Y2K1 713 aa16.29■□□□□ 0.2
HIF3A-201ENST00000244302 NBPF7P0C2Y1 421 aaPredicted RBP16.28■□□□□ 0.2
HIF3A-201ENST00000244302 RIC3Q7Z5B4 369 aa16.28■□□□□ 0.2
HIF3A-201ENST00000244302 ARXQ96QS3 562 aa16.28■□□□□ 0.2
HIF3A-201ENST00000244302 PALLDQ8WX93 1383 aa16.28■□□□□ 0.2
HIF3A-201ENST00000244302 ATP5J2-PTCD1G3V325 749 aa16.28■□□□□ 0.2
HIF3A-201ENST00000244302 IGKV5-2P06315 115 aa16.28■□□□□ 0.2
HIF3A-201ENST00000244302 CCT4P50991 539 aaKnown RBP16.28■□□□□ 0.2
HIF3A-201ENST00000244302 ANKRD13DQ6ZTN6 518 aa16.28■□□□□ 0.2
HIF3A-201ENST00000244302 ZBTB3Q9H5J0 574 aa16.28■□□□□ 0.2
HIF3A-201ENST00000244302 ZNF772Q68DY9 489 aaPredicted RBP16.27■□□□□ 0.2
HIF3A-201ENST00000244302 VSIG10Q8N0Z9 540 aa16.27■□□□□ 0.2
HIF3A-201ENST00000244302 RBM6P78332 1123 aaKnown RBP16.27■□□□□ 0.19
HIF3A-201ENST00000244302 KRT27Q7Z3Y8 459 aa16.27■□□□□ 0.19
HIF3A-201ENST00000244302 MYD88Q99836 296 aa16.27■□□□□ 0.19
HIF3A-201ENST00000244302 SRCIN1Q9C0H9 1055 aa16.27■□□□□ 0.19
HIF3A-201ENST00000244302 CACNA1FO60840 1977 aa16.26■□□□□ 0.19
HIF3A-201ENST00000244302 INTS5Q6P9B9 1019 aaKnown RBP16.25■□□□□ 0.19
HIF3A-201ENST00000244302 TRIM37O94972 964 aa16.25■□□□□ 0.19
HIF3A-201ENST00000244302 STARD3NLO95772 234 aa16.25■□□□□ 0.19
HIF3A-201ENST00000244302 BCL11AQ9H165 835 aa16.25■□□□□ 0.19
HIF3A-201ENST00000244302 CENPQQ7L2Z9 268 aaPredicted RBP16.24■□□□□ 0.19
HIF3A-201ENST00000244302 CHMP4AQ9BY43 222 aa16.24■□□□□ 0.19
HIF3A-201ENST00000244302 BRWD3Q6RI45 1802 aa16.24■□□□□ 0.19
HIF3A-201ENST00000244302 RXRBP28702 533 aa16.24■□□□□ 0.19
HIF3A-201ENST00000244302 RTL5Q5HYW3 569 aaPredicted RBP16.24■□□□□ 0.19
HIF3A-201ENST00000244302 LINC00116Q8NCU8 138 aa16.24■□□□□ 0.19
HIF3A-201ENST00000244302 TBC1D2BQ9UPU7 963 aa16.24■□□□□ 0.19
HIF3A-201ENST00000244302 LRRFIP2Q9Y608 721 aaKnown RBP16.24■□□□□ 0.19
HIF3A-201ENST00000244302 CRKLP46109 303 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms