RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SRGAP3O43295 1099 aa22.71■■□□□ 1.23
CPSF3-201ENST00000238112 RHPN1Q8TCX5 695 aa22.71■■□□□ 1.23
CPSF3-201ENST00000238112 RBSNQ9H1K0 784 aa22.71■■□□□ 1.23
CPSF3-201ENST00000238112 ZSCAN30Q86W11 494 aa22.71■■□□□ 1.23
CPSF3-201ENST00000238112 KIF1BPQ96EK5 621 aa22.71■■□□□ 1.23
CPSF3-201ENST00000238112 HOXB7P09629 217 aa22.7■■□□□ 1.22
CPSF3-201ENST00000238112 EIF4A1P60842 406 aaKnown RBP22.7■■□□□ 1.22
CPSF3-201ENST00000238112 IP6K1Q92551 441 aa22.7■■□□□ 1.22
CPSF3-201ENST00000238112 TMEM63CQ9P1W3 806 aa22.7■■□□□ 1.22
CPSF3-201ENST00000238112 HSPA4P34932 840 aa22.69■■□□□ 1.22
CPSF3-201ENST00000238112 MAP4K4O95819 1239 aaPredicted RBP22.69■■□□□ 1.22
CPSF3-201ENST00000238112 LRSAM1Q6UWE0 723 aa22.69■■□□□ 1.22
CPSF3-201ENST00000238112 CHPF2Q9P2E5 772 aa22.69■■□□□ 1.22
CPSF3-201ENST00000238112 PHF8Q9UPP1 1060 aa22.69■■□□□ 1.22
CPSF3-201ENST00000238112 PI4K2BQ8TCG2 481 aa22.68■■□□□ 1.22
CPSF3-201ENST00000238112 DNAAF4Q8WXU2 420 aa22.68■■□□□ 1.22
CPSF3-201ENST00000238112 IL25Q9H293 177 aa22.68■■□□□ 1.22
CPSF3-201ENST00000238112 NBPF7P0C2Y1 421 aaPredicted RBP22.68■■□□□ 1.22
CPSF3-201ENST00000238112 MSNP26038 577 aaKnown RBP22.68■■□□□ 1.22
CPSF3-201ENST00000238112 CNTROBQ8N137 903 aa22.68■■□□□ 1.22
CPSF3-201ENST00000238112 SYCE3A1L190 88 aa22.67■■□□□ 1.22
CPSF3-201ENST00000238112 HSP90AB4PQ58FF6 505 aa22.67■■□□□ 1.22
CPSF3-201ENST00000238112 LGR6Q9HBX8 967 aa22.67■■□□□ 1.22
CPSF3-201ENST00000238112 PI4KAP2A4QPH2 592 aa22.66■■□□□ 1.22
CPSF3-201ENST00000238112 BEND3Q5T5X7 828 aa22.66■■□□□ 1.22
CPSF3-201ENST00000238112 NBPF6Q5VWK0 638 aa22.66■■□□□ 1.22
CPSF3-201ENST00000238112 PI4KAP1Q8N8J0 262 aa22.66■■□□□ 1.22
CPSF3-201ENST00000238112 NBPF4Q96M43 638 aa22.66■■□□□ 1.22
CPSF3-201ENST00000238112 NSFL1CQ9UNZ2 370 aaKnown RBP22.66■■□□□ 1.22
CPSF3-201ENST00000238112 SGSM2O43147 1006 aa22.65■■□□□ 1.22
CPSF3-201ENST00000238112 TEFQ10587 303 aa22.65■■□□□ 1.22
CPSF3-201ENST00000238112 RAD50Q92878 1312 aa22.65■■□□□ 1.22
CPSF3-201ENST00000238112 HS1BP3Q53T59 392 aa22.65■■□□□ 1.22
CPSF3-201ENST00000238112 ZBTB7CA1YPR0 619 aa22.64■■□□□ 1.22
CPSF3-201ENST00000238112 FER1L4A9Z1Z3 1794 aa22.64■■□□□ 1.21
CPSF3-201ENST00000238112 LTN1O94822 1766 aa22.64■■□□□ 1.21
CPSF3-201ENST00000238112 WDR33Q9C0J8 1336 aaKnown RBP22.64■■□□□ 1.21
CPSF3-201ENST00000238112 OS9Q13438 667 aaPredicted RBP22.64■■□□□ 1.21
CPSF3-201ENST00000238112 MED1Q15648 1581 aaPredicted RBP22.64■■□□□ 1.21
CPSF3-201ENST00000238112 BTBD11A6QL63 1104 aa22.63■■□□□ 1.21
CPSF3-201ENST00000238112 KIAA1211Q6ZU35 1233 aa22.63■■□□□ 1.21
CPSF3-201ENST00000238112 SYAP1Q96A49 352 aaPredicted RBP22.63■■□□□ 1.21
CPSF3-201ENST00000238112 PDLIM2Q96JY6 352 aa22.63■■□□□ 1.21
CPSF3-201ENST00000238112 ZNF530Q6P9A1 599 aaPredicted RBP22.62■■□□□ 1.21
CPSF3-201ENST00000238112 KCNQ3O43525 872 aa22.62■■□□□ 1.21
CPSF3-201ENST00000238112 AKAP4Q5JQC9 854 aa22.62■■□□□ 1.21
CPSF3-201ENST00000238112 KCNH5Q8NCM2 988 aa22.61■■□□□ 1.21
CPSF3-201ENST00000238112 SNX14Q9Y5W7 946 aa22.61■■□□□ 1.21
CPSF3-201ENST00000238112 ANXA1P04083 346 aa22.6■■□□□ 1.21
CPSF3-201ENST00000238112 PLEKHO1Q53GL0 409 aaPredicted RBP22.6■■□□□ 1.21
CPSF3-201ENST00000238112 LSG1Q9H089 658 aaKnown RBP22.6■■□□□ 1.21
CPSF3-201ENST00000238112 TTC41PQ6P2S7 1318 aa22.6■■□□□ 1.21
CPSF3-201ENST00000238112 PSME1Q06323 249 aa22.6■■□□□ 1.21
CPSF3-201ENST00000238112 FOXD4L6Q3SYB3 417 aaPredicted RBP22.6■■□□□ 1.21
CPSF3-201ENST00000238112 FOXD4L3Q6VB84 417 aaPredicted RBP22.6■■□□□ 1.21
CPSF3-201ENST00000238112 NFAT5O94916 1531 aa22.6■■□□□ 1.21
CPSF3-201ENST00000238112 GLRX3O76003 335 aaKnown RBP22.59■■□□□ 1.21
CPSF3-201ENST00000238112 PLEKHG5O94827 1062 aa22.59■■□□□ 1.21
CPSF3-201ENST00000238112 CWC27Q6UX04 472 aaKnown RBP22.59■■□□□ 1.21
CPSF3-201ENST00000238112 DBF4Q9UBU7 674 aaPredicted RBP22.59■■□□□ 1.21
CPSF3-201ENST00000238112 ADCY9O60503 1353 aa22.59■■□□□ 1.21
CPSF3-201ENST00000238112 KDM3BQ7LBC6 1761 aa22.59■■□□□ 1.21
CPSF3-201ENST00000238112 USP42Q9H9J4 1324 aaKnown RBP22.59■■□□□ 1.21
CPSF3-201ENST00000238112 MPRIPQ6WCQ1 1025 aa22.58■■□□□ 1.21
CPSF3-201ENST00000238112 CLASRPQ8N2M8 674 aaKnown RBP22.58■■□□□ 1.21
CPSF3-201ENST00000238112 LRRC59Q96AG4 307 aaKnown RBP22.58■■□□□ 1.2
CPSF3-201ENST00000238112 DIAPH3Q9NSV4 1193 aa22.58■■□□□ 1.2
CPSF3-201ENST00000238112 PHF14O94880 888 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 RUFY2Q8WXA3 655 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 C9orf78Q9NZ63 289 aaPredicted RBP22.57■■□□□ 1.2
CPSF3-201ENST00000238112 NOL7Q9UMY1 257 aaKnown RBP22.57■■□□□ 1.2
CPSF3-201ENST00000238112 MTX1Q13505 466 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 AMOTQ4VCS5 1084 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 C1orf141Q5JVX7 400 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 TTC14Q96N46 770 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 TSPY26PQ9H489 355 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 GDPD2Q9HCC8 539 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 ADGRL3Q9HAR2 1447 aa22.57■■□□□ 1.2
CPSF3-201ENST00000238112 AK2P54819 239 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 ESCO1Q5FWF5 840 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 GPATCH3Q96I76 525 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 LIMCH1Q9UPQ0 1083 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 SPG7Q9UQ90 795 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.56■■□□□ 1.2
CPSF3-201ENST00000238112 USP48Q86UV5 1035 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 RASEFQ8IZ41 740 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 RNF214Q8ND24 703 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 HDAC5Q9UQL6 1122 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 MAP3K2Q9Y2U5 619 aa22.56■■□□□ 1.2
CPSF3-201ENST00000238112 ALDH1L1O75891 902 aa22.55■■□□□ 1.2
CPSF3-201ENST00000238112 RPAP1Q9BWH6 1393 aaPredicted RBP22.55■■□□□ 1.2
CPSF3-201ENST00000238112 RNMTO43148 476 aaKnown RBP22.54■■□□□ 1.2
CPSF3-201ENST00000238112 TPM2P07951 284 aa22.54■■□□□ 1.2
CPSF3-201ENST00000238112 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.54■■□□□ 1.2
CPSF3-201ENST00000238112 ERC1Q8IUD2 1116 aa22.54■■□□□ 1.2
CPSF3-201ENST00000238112 RBM33Q96EV2 1170 aaKnown RBP22.54■■□□□ 1.2
CPSF3-201ENST00000238112 LMO7Q8WWI1 1683 aa22.54■■□□□ 1.2
CPSF3-201ENST00000238112 OFD1O75665 1012 aa22.54■■□□□ 1.2
CPSF3-201ENST00000238112 ECHDC1Q9NTX5 307 aa22.54■■□□□ 1.2
CPSF3-201ENST00000238112 GADD45BO75293 160 aaPredicted RBP22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms