RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 AK2P54819 239 aa16.95■□□□□ 0.3
USH1C-201ENST00000005226 WDR33Q9C0J8 1336 aaKnown RBP16.95■□□□□ 0.3
USH1C-201ENST00000005226 ARHGEF10O15013 1369 aa16.94■□□□□ 0.3
USH1C-201ENST00000005226 NBPF7P0C2Y1 421 aaPredicted RBP16.94■□□□□ 0.3
USH1C-201ENST00000005226 HCLS1P14317 486 aaPredicted RBP16.94■□□□□ 0.3
USH1C-201ENST00000005226 PLCB2Q00722 1185 aa16.94■□□□□ 0.3
USH1C-201ENST00000005226 RPAP1Q9BWH6 1393 aaPredicted RBP16.94■□□□□ 0.3
USH1C-201ENST00000005226 TTC12Q9H892 705 aaPredicted RBP16.94■□□□□ 0.3
USH1C-201ENST00000005226 FIBPO43427 364 aa16.94■□□□□ 0.3
USH1C-201ENST00000005226 LARGE1O95461 756 aa16.94■□□□□ 0.3
USH1C-201ENST00000005226 SYAP1Q96A49 352 aaPredicted RBP16.94■□□□□ 0.3
USH1C-201ENST00000005226 USP31Q70CQ4 1352 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 SOS1Q07889 1333 aaPredicted RBP16.93■□□□□ 0.3
USH1C-201ENST00000005226 SRGAP3O43295 1099 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 TERF1P54274 439 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 DNTTIP2Q5QJE6 756 aaKnown RBP16.93■□□□□ 0.3
USH1C-201ENST00000005226 HDGFL1Q5TGJ6 251 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 RUFY3Q7L099 469 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 PI4K2BQ8TCG2 481 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 RHPN1Q8TCX5 695 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 NLRP6P59044 892 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 PPP6R1Q9UPN7 881 aa16.93■□□□□ 0.3
USH1C-201ENST00000005226 SYT1P21579 422 aa16.92■□□□□ 0.3
USH1C-201ENST00000005226 HDGFP51858 240 aaKnown RBP16.92■□□□□ 0.3
USH1C-201ENST00000005226 CSPP1Q1MSJ5 1256 aa16.92■□□□□ 0.3
USH1C-201ENST00000005226 SSH3Q8TE77 659 aa16.92■□□□□ 0.3
USH1C-201ENST00000005226 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.92■□□□□ 0.3
USH1C-201ENST00000005226 IGSF1Q8N6C5 1336 aa16.92■□□□□ 0.3
USH1C-201ENST00000005226 SGSM2O43147 1006 aa16.92■□□□□ 0.3
USH1C-201ENST00000005226 TECPR2O15040 1411 aa16.92■□□□□ 0.3
USH1C-201ENST00000005226 FLT4P35916 1363 aa16.92■□□□□ 0.3
USH1C-201ENST00000005226 FAM177BA6PVY3 158 aa16.91■□□□□ 0.3
USH1C-201ENST00000005226 MCM5P33992 734 aa16.91■□□□□ 0.3
USH1C-201ENST00000005226 LSG1Q9H089 658 aaKnown RBP16.91■□□□□ 0.3
USH1C-201ENST00000005226 RGPD1P0DJD0 1748 aa16.91■□□□□ 0.3
USH1C-201ENST00000005226 ADCY5O95622 1261 aa16.91■□□□□ 0.3
USH1C-201ENST00000005226 ZSCAN22P10073 491 aaPredicted RBP16.91■□□□□ 0.3
USH1C-201ENST00000005226 GIMAP6Q6P9H5 292 aa16.91■□□□□ 0.3
USH1C-201ENST00000005226 KIAA2012Q0VF49 1180 aa16.9■□□□□ 0.3
USH1C-201ENST00000005226 TAF7Q15545 349 aaPredicted RBP16.9■□□□□ 0.3
USH1C-201ENST00000005226 SBNO1A3KN83 1393 aa16.9■□□□□ 0.3
USH1C-201ENST00000005226 SASS6Q6UVJ0 657 aa16.9■□□□□ 0.3
USH1C-201ENST00000005226 CCDC83Q8IWF9 413 aa16.9■□□□□ 0.3
USH1C-201ENST00000005226 TTC14Q96N46 770 aa16.9■□□□□ 0.3
USH1C-201ENST00000005226 KCNQ3O43525 872 aa16.9■□□□□ 0.3
USH1C-201ENST00000005226 STX6O43752 255 aa16.9■□□□□ 0.3
USH1C-201ENST00000005226 CASTP20810 708 aaKnown RBP16.9■□□□□ 0.3
USH1C-201ENST00000005226 RAD50Q92878 1312 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 PLEKHG5O94827 1062 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 PTH1RQ03431 593 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 ADCK5Q3MIX3 580 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 CHMP3Q9Y3E7 222 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 KDRP35968 1356 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 COL9A3Q14050 684 aaPredicted RBP16.89■□□□□ 0.29
USH1C-201ENST00000005226 CCDC183Q5T5S1 534 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 SMC3Q9UQE7 1217 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 TMEM2Q9UHN6 1383 aa16.89■□□□□ 0.29
USH1C-201ENST00000005226 SSH2Q76I76 1423 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 ADAMTS13Q76LX8 1427 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 TUBGCP6Q96RT7 1819 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 PHF14O94880 888 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 CEBPAP49715 358 aaPredicted RBP16.88■□□□□ 0.29
USH1C-201ENST00000005226 DNM1Q05193 864 aaKnown RBP16.88■□□□□ 0.29
USH1C-201ENST00000005226 LIMCH1Q9UPQ0 1083 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 AMOTL2Q9Y2J4 779 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 PI4KAP2A4QPH2 592 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 OS9Q13438 667 aaPredicted RBP16.88■□□□□ 0.29
USH1C-201ENST00000005226 C14orf37Q86TY3 774 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 PI4KAP1Q8N8J0 262 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 LGR6Q9HBX8 967 aa16.88■□□□□ 0.29
USH1C-201ENST00000005226 AP5Z1O43299 807 aa16.87■□□□□ 0.29
USH1C-201ENST00000005226 HOXC9P31274 260 aa16.87■□□□□ 0.29
USH1C-201ENST00000005226 POLA2Q14181 598 aa16.87■□□□□ 0.29
USH1C-201ENST00000005226 NECAB1Q8N987 351 aa16.87■□□□□ 0.29
USH1C-201ENST00000005226 CHPF2Q9P2E5 772 aa16.87■□□□□ 0.29
USH1C-201ENST00000005226 F13A1P00488 732 aa16.87■□□□□ 0.29
USH1C-201ENST00000005226 PRPF40BQ6NWY9 871 aaKnown RBP16.87■□□□□ 0.29
USH1C-201ENST00000005226 IL17RAQ96F46 866 aa16.87■□□□□ 0.29
USH1C-201ENST00000005226 GJB2P29033 226 aa16.86■□□□□ 0.29
USH1C-201ENST00000005226 TNRQ92752 1358 aa16.86■□□□□ 0.29
USH1C-201ENST00000005226 PTPRUQ92729 1446 aa16.86■□□□□ 0.29
USH1C-201ENST00000005226 DYNC1I1O14576 645 aa16.86■□□□□ 0.29
USH1C-201ENST00000005226 RAB11FIP3O75154 756 aa16.86■□□□□ 0.29
USH1C-201ENST00000005226 NOLC1Q14978 699 aaKnown RBP eCLIP16.86■□□□□ 0.29
USH1C-201ENST00000005226 CNTROBQ8N137 903 aa16.86■□□□□ 0.29
USH1C-201ENST00000005226 KIF1BPQ96EK5 621 aa16.86■□□□□ 0.29
USH1C-201ENST00000005226 JAKMIP1Q96N16 626 aaKnown RBP16.86■□□□□ 0.29
USH1C-201ENST00000005226 PA2G4Q9UQ80 394 aaKnown RBP16.86■□□□□ 0.29
USH1C-201ENST00000005226 XRN1Q8IZH2 1706 aaKnown RBP16.86■□□□□ 0.29
USH1C-201ENST00000005226 FAM173BQ6P4H8 233 aa16.85■□□□□ 0.29
USH1C-201ENST00000005226 VPS37CA5D8V6 355 aaPredicted RBP16.85■□□□□ 0.29
USH1C-201ENST00000005226 UBE2HP62256 183 aa16.85■□□□□ 0.29
USH1C-201ENST00000005226 HYPKQ9NX55 129 aa16.85■□□□□ 0.29
USH1C-201ENST00000005226 AOX1Q06278 1338 aa16.85■□□□□ 0.29
USH1C-201ENST00000005226 AGLP35573 1532 aa16.84■□□□□ 0.29
USH1C-201ENST00000005226 MAP3K5Q99683 1374 aa16.84■□□□□ 0.29
USH1C-201ENST00000005226 HTATSF1O43719 755 aaKnown RBP16.84■□□□□ 0.29
USH1C-201ENST00000005226 FERMT3Q86UX7 667 aa16.84■□□□□ 0.29
USH1C-201ENST00000005226 TMEM87AQ8NBN3 555 aa16.84■□□□□ 0.29
USH1C-201ENST00000005226 SPC24Q8NBT2 197 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms