RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MAN2A2P49641 1150 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 ZBED5Q49AG3 693 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 OR51L1Q8NGJ5 315 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 SLC7A14Q8TBB6 771 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 MSI2Q96DH6 328 aaKnown RBP3.46□□□□□ -1.85
SCN1A-221ENST00000641996 WBP1LQ9NX94 342 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 SALL4Q9UJQ4 1053 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 SPG11Q96JI7 2443 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ADGRA3Q8IWK6 1321 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ACACAQ13085 2346 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PHGDHO43175 533 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ATG12O94817 140 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 S100A8P05109 93 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SREBF1P36956 1147 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TUBB3Q13509 450 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 FASTKQ14296 549 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 C16orf46Q6P387 395 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 LRRN1Q6UXK5 716 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 FNDC11Q9BVV2 318 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ROPN1Q9HAT0 212 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SLC17A7Q9P2U7 560 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PCDHA8Q9Y5H6 950 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CLIC4Q9Y696 253 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ADGRF5Q8IZF2 1346 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SDK1Q7Z5N4 2213 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 FRS3O43559 492 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ALDOAP04075 364 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 RPLP0P05388 317 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 RPS3P23396 243 aaKnown RBP eCLIP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 BCAT1P54687 386 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CSTF1Q05048 431 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TOMM34Q15785 309 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SLC22A6Q4U2R8 563 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 GLT6D1Q7Z4J2 308 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 GLIS1Q8NBF1 620 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CPNE4Q96A23 557 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TMA16Q96EY4 203 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 MVB12AQ96EY5 273 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SLC41A3Q96GZ6 507 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 AKR1E2Q96JD6 320 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PCIF1Q9H4Z3 704 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PRMT7Q9NVM4 692 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 GLS2Q9UI32 602 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PLEKHG1Q9ULL1 1385 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 BCLAF3A2AJT9 711 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ARL4DP49703 201 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 NCMAPQ5T1S8 102 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 FBXL19Q6PCT2 694 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 LYPD8Q6UX82 237 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ASPGQ86U10 573 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF679Q8IYX0 411 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 KYQ8NBH2 561 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 NT5C3BQ969T7 300 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 L3HYPDHQ96EM0 354 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PLK3Q9H4B4 646 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ESRP2Q9H6T0 727 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PRDM7Q9NQW5 492 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TAS2R9Q9NYW1 312 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PAK5Q9P286 719 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PCDH15Q96QU1 1955 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ERVV-2B6SEH9 535 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CXCR6O00574 342 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 HRGP04196 525 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PRPS1L1P21108 318 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CMPK1P30085 196 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CYP2C18P33260 490 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SOX9P48436 509 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 INPP5JQ15735 1006 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SLC10A6Q3KNW5 377 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PEG10Q86TG7 708 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 LDB1Q86U70 411 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ERI1Q8IV48 349 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SLC25A41Q8N5S1 370 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 OR10W1Q8NGF6 305 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ST6GALNAC6Q969X2 333 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 HARBI1Q96MB7 349 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 USE1Q9NZ43 259 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 NSFL1CQ9UNZ2 370 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM150BA6NC51 233 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TRABD2BA6NFA1 517 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 NPHS1O60500 1241 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 AOC2O75106 756 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CRHP06850 196 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 IL7RP16871 459 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CSF2RBP32927 897 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PSEN2P49810 448 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PLA2G16P53816 162 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PMP22Q01453 160 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 KCNMA1Q12791 1236 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 KLF1Q13351 362 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 QPRTQ15274 297 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ASPRV1Q53RT3 343 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TEX30Q5JUR7 227 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ARL14Q8N4G2 192 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 DTWD2Q8NBA8 298 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 OR11L1Q8NGX0 322 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CGRRF1Q99675 332 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SRSF8Q9BRL6 282 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TMPRSS13Q9BYE2 586 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms