RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MATN3O15232 486 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HK1P19367 917 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CHATP28329 748 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CENPAP49450 140 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CRISP3P54108 245 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HNF4GQ14541 408 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 AADACL4Q5VUY2 407 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FAM183BPQ6ZVS7 135 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ZBTB46Q86UZ6 589 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 KIAA1191Q96A73 305 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 LINGO1Q96FE5 620 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CMTM7Q96FZ5 175 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TMEM41AQ96HV5 264 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HSH2DQ96JZ2 352 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 IL4I1Q96RQ9 567 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TREX2Q9BQ50 279 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TEX10Q9NXF1 929 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 KPTNQ9Y664 436 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TMEM14AQ9Y6G1 99 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RBBP9O75884 186 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SPATA31C1P0DKV0 1188 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 JUPP14923 745 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 WNT3AP56704 352 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 GBE1Q04446 702 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 MLLT11Q13015 90 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 UBXN2BQ14CS0 331 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FXNQ16595 210 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ATXN7L2Q5T6C5 722 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF691Q5VV52 312 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RALGPS2Q86X27 583 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ZBED6CLQ96FA7 236 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 MASTLQ96GX5 879 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FBXL18Q96ME1 805 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TBC1D17Q9HA65 648 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ABCB8Q9NUT2 735 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 OLAHQ9NV23 265 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 BTG4Q9NY30 223 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 COL1A2P08123 1366 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TCP10L2B9ZVM9 353 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 COL6A1P12109 1028 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 GRK5P34947 590 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CPOXP36551 454 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HTRA4P83105 476 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FOXD4Q12950 439 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CDK5R2Q13319 367 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 GPR33Q49SQ1 333 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 MSS51Q4VC12 460 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CIR1Q86X95 450 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 DAW1Q8N136 415 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PGBD3Q8N328 593 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 C3orf58Q8NDZ4 430 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PROKR2Q8NFJ6 384 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TTLQ8NG68 377 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SPPL2BQ8TCT7 592 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 NTPCRQ9BSD7 190 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TSPOAP1O95153 1857 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF780AO75290 641 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 URODP06132 367 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RAB40ALP0C0E4 278 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RHCEP18577 417 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FAM98AQ8NCA5 519 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SLC16A10Q8TF71 515 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RAB40AQ8WXH6 277 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CORO2AQ92828 525 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TMEM143Q96AN5 459 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ARHGEF4Q9NR80 690 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 NLGN3Q9NZ94 848 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CDHR4A6H8M9 788 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CHURC1-FNTBB4DL54 471 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 BMP4P12644 408 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 KCNA5P22460 613 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RBMXP38159 391 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 WNT4P56705 351 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 C14orf28Q4W4Y0 310 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 C10orf120Q5SQS8 335 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ZBTB37Q5TC79 503 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RPL22L1Q6P5R6 122 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CATSPERGQ6ZRH7 1159 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 C3orf67Q6ZVT6 689 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RASGRP3Q8IV61 690 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 POMGNT2Q8NAT1 580 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FAM156AQ8NDB6 213 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SIGLEC10Q96LC7 697 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CHIAQ9BZP6 476 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 NTN4Q9HB63 628 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 BRD7Q9NPI1 651 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 AKIP1Q9NQ31 210 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SDR39U1Q9NRG7 319 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 LRRC14BA6NHZ5 514 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 E9PAM4 449 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TAS2R39P59534 338 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM236Q5W0B7 351 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 NANOGP8Q6NSW7 305 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 OTOP3Q7RTS5 596 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 LRRC56Q8IYG6 542 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-220ENST00000641603 FBXO22Q8NEZ5 403 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 ST8SIA4Q92187 359 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 C12orf57Q99622 126 aa4.52□□□□□ -1.69
SCN1A-220ENST00000641603 PDCD2LQ9BRP1 358 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms