RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF470Q6ECI4 717 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 ZNF549Q6P9A3 640 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 PCGF5Q86SE9 256 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 ASPGQ86U10 573 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 SLC26A11Q86WA9 606 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 RPS19BP1Q86WX3 136 aaKnown RBP18.23■□□□□ 0.51
CLN3-262ENST00000637699 KIF2BQ8N4N8 673 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 CPSF7Q8N684 471 aaKnown RBP18.23■□□□□ 0.51
CLN3-262ENST00000637699 PHF10Q8WUB8 498 aaKnown RBP18.23■□□□□ 0.51
CLN3-262ENST00000637699 SLC13A3Q8WWT9 602 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 TM4SF19Q96DZ7 209 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 THAP11Q96EK4 314 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 DMRTA2Q96SC8 542 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 VKORC1Q9BQB6 163 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 CCDC68Q9H2F9 335 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 FBXO6Q9NRD1 293 aaPredicted RBP18.23■□□□□ 0.51
CLN3-262ENST00000637699 LANCL2Q9NS86 450 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 ASB1Q9Y576 335 aa18.23■□□□□ 0.51
CLN3-262ENST00000637699 MAGEB17A8MXT2 336 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 SLC25A12O75746 678 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 ENO3P13929 434 aaPredicted RBP18.22■□□□□ 0.51
CLN3-262ENST00000637699 TPSB2P20231 275 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 CDK16Q00536 496 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 CTBP1Q13363 440 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 RPS6KA1Q15418 735 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 TPSAB1Q15661 275 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 CAPN13Q6MZZ7 669 aaPredicted RBP18.22■□□□□ 0.51
CLN3-262ENST00000637699 PIWIL4Q7Z3Z4 852 aaKnown RBP18.22■□□□□ 0.51
CLN3-262ENST00000637699 FGD2Q7Z6J4 655 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 DENND6AQ8IWF6 608 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 CPNE9Q8IYJ1 553 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 RNF10Q8N5U6 811 aaKnown RBP18.22■□□□□ 0.51
CLN3-262ENST00000637699 OR5T3Q8NGG3 340 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 ALKBH8Q96BT7 664 aaKnown RBP18.22■□□□□ 0.51
CLN3-262ENST00000637699 GPR21Q99679 349 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 COQ3Q9NZJ6 369 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 KLHL42Q9P2K6 505 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 DHRS7Q9Y394 339 aa18.22■□□□□ 0.51
CLN3-262ENST00000637699 NME2P1O60361 137 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 NME2P22392 152 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 TPP2P29144 1249 aaPredicted RBP18.21■□□□□ 0.51
CLN3-262ENST00000637699 PTGER1P34995 402 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 THOC5Q13769 683 aaKnown RBP18.21■□□□□ 0.51
CLN3-262ENST00000637699 DHX34Q14147 1143 aaKnown RBP18.21■□□□□ 0.51
CLN3-262ENST00000637699 TRIP13Q15645 432 aaPredicted RBP18.21■□□□□ 0.51
CLN3-262ENST00000637699 DRICH1Q6PGQ1 229 aaPredicted RBP18.21■□□□□ 0.51
CLN3-262ENST00000637699 C17orf64Q86WR6 236 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 CYP4X1Q8N118 509 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 LGI4Q8N135 537 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 ACBD4Q8NC06 268 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 ELP5Q8TE02 316 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 KCNJ9Q92806 393 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 OLFM1Q99784 485 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 ATG10Q9H0Y0 220 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 GUCA1BQ9UMX6 200 aa18.21■□□□□ 0.51
CLN3-262ENST00000637699 FANCGO15287 622 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 DNAJB6O75190 326 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 SLC35G6P0C7Q6 338 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 IL10P22301 178 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 CYB561P49447 251 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 MBOAT1Q6ZNC8 495 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 EID3Q8N140 333 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 CD200R1Q8TD46 325 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 ZNF669Q96BR6 464 aaPredicted RBP18.2■□□□□ 0.5
CLN3-262ENST00000637699 OR1F2PQ96R84 312 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 PCBD2Q9H0N5 130 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 SAMD15Q9P1V8 674 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 SLC22A7Q9Y694 548 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 SPG11Q96JI7 2443 aa18.2■□□□□ 0.5
CLN3-262ENST00000637699 B4GALT2O60909 372 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 FHP07954 510 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 CDH1P12830 882 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 GRK3P35626 688 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 VPS41P49754 854 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 ITGA8P53708 1063 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 OLR1P78380 273 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 SARNPP82979 210 aaKnown RBP18.19■□□□□ 0.5
CLN3-262ENST00000637699 NAE1Q13564 534 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 AGTRAPQ6RW13 159 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 CEP128Q6ZU80 1094 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 ZNF227Q86WZ6 799 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 MFSD9Q8NBP5 474 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 TMEM125Q96AQ2 219 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 TBC1D20Q96BZ9 403 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 TREX2Q9BQ50 279 aaPredicted RBP18.19■□□□□ 0.5
CLN3-262ENST00000637699 ADAMTS6Q9UKP5 1117 aa18.19■□□□□ 0.5
CLN3-262ENST00000637699 A0A1B0GTH9 108 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 TFECO14948 347 aaPredicted RBP18.18■□□□□ 0.5
CLN3-262ENST00000637699 CHST10O43529 356 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 DIAPH2O60879 1101 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 B3GALT4O96024 378 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 TPOP07202 933 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 PTGS2P35354 604 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 RFC3P40938 356 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 MPP1Q00013 466 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 HERC3Q15034 1050 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 DEFB134Q4QY38 66 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 CD163Q86VB7 1156 aa18.18■□□□□ 0.5
CLN3-262ENST00000637699 CAND1Q86VP6 1230 aaKnown RBP18.18■□□□□ 0.5
CLN3-262ENST00000637699 ZNF740Q8NDX6 193 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms