RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CACNA1EQ15878 2313 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 LRIT2A6NDA9 550 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 RHPN2P1A8MT19 583 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 PATE3B3GLJ2 98 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 NDUFS4O43181 175 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 PRPS1L1P21108 318 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 HNRNPH1P31943 449 aaKnown RBP17.6■□□□□ 0.41
CLN3-254ENST00000637050 PGM1P36871 562 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 ASMTP46597 345 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 CYP4F3Q08477 520 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 HYAL2Q12891 473 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 TIGD2Q4W5G0 525 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 TMEM35AQ53FP2 167 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 PGAM4Q8N0Y7 254 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 ROPN1LQ96C74 230 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 THAP11Q96EK4 314 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 AICDAQ9GZX7 198 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 IL21RQ9HBE5 538 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 LRIT1Q9P2V4 623 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 MCM8Q9UJA3 840 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 SDK1Q7Z5N4 2213 aa17.6■□□□□ 0.41
CLN3-254ENST00000637050 CFLARO15519 480 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 CTSVO60911 334 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 KLHL18O94889 574 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 IL6P05231 212 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 PVRP15151 417 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 BSGP35613 385 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 RAP1GDS1P52306 607 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 DGKQP52824 942 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 FAM174BQ3ZCQ3 159 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 RIPOR1Q6ZS17 1223 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 VN1R4Q7Z5H5 301 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 UBE3DQ7Z6J8 389 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 GATAD2AQ86YP4 633 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 ARHGAP24Q8N264 748 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.59■□□□□ 0.41
CLN3-254ENST00000637050 RGMAQ96B86 450 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 OR2A5Q96R48 311 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 CENPKQ9BS16 269 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 THTPAQ9BU02 230 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 DUSP23Q9BVJ7 150 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 REXO4Q9GZR2 422 aaKnown RBP17.59■□□□□ 0.41
CLN3-254ENST00000637050 SEMA6CQ9H3T2 930 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 GAREM1Q9H706 876 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 WDR41Q9HAD4 459 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 LHX9Q9NQ69 397 aa17.59■□□□□ 0.41
CLN3-254ENST00000637050 LEF1Q9UJU2 399 aaPredicted RBP17.59■□□□□ 0.41
CLN3-254ENST00000637050 GNG14A0A1W2PPG7 69 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 SERPIND1P05546 499 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 KLK1P06870 262 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 GLB1P16278 677 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 TPP2P29144 1249 aaPredicted RBP17.58■□□□□ 0.41
CLN3-254ENST00000637050 ARFIP1P53367 373 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 ZNF763Q0D2J5 394 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 TRIM61Q5EBN2 209 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 SPANXN4Q5MJ08 99 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 ZCCHC8Q6NZY4 707 aaKnown RBP17.58■□□□□ 0.41
CLN3-254ENST00000637050 C8orf82Q6P1X6 216 aaPredicted RBP17.58■□□□□ 0.41
CLN3-254ENST00000637050 OR4C6Q8NH72 309 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 MS4A6EQ96DS6 147 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 TM4SF19Q96DZ7 209 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 FCRL4Q96PJ5 515 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 ZFYVE21Q9BQ24 234 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 SORBS1Q9BX66 1292 aaKnown RBP17.58■□□□□ 0.41
CLN3-254ENST00000637050 RAB33BQ9H082 229 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 KLHL25Q9H0H3 589 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 ADAM29Q9UKF5 820 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 MAPRE3Q9UPY8 281 aa17.58■□□□□ 0.41
CLN3-254ENST00000637050 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.58■□□□□ 0.41
CLN3-254ENST00000637050 PCDH15Q96QU1 1955 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 A0A088AWK7 358 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 LRATO95237 230 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 GBAP04062 536 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 PGRP06401 933 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 GPR3P46089 330 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 NR1D2Q14995 579 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 DPY19L1Q2PZI1 675 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 PAGE3Q5JUK9 113 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 RNF44Q7L0R7 432 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 PAGE2Q7Z2X7 111 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 DPP10Q8N608 796 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 NT5CQ8TCD5 201 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 SLC13A3Q8WWT9 602 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 STARD8Q92502 1023 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 SLC6A16Q9GZN6 736 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 KLHL31Q9H511 634 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 MYNNQ9NPC7 610 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 C11orf16Q9NQ32 467 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 EPHA6Q9UF33 1036 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 PRPF19Q9UMS4 504 aaKnown RBP17.58■□□□□ 0.4
CLN3-254ENST00000637050 PCDHGA7Q9Y5G6 932 aa17.58■□□□□ 0.4
CLN3-254ENST00000637050 PI4KAP42356 2102 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 FAM86C2PA6NEL3 165 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 H0YHG0 523 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 RTCAO00442 366 aaKnown RBP17.57■□□□□ 0.4
CLN3-254ENST00000637050 TRIM38O00635 465 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 ARHGAP33O14559 1287 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 AKAP10O43572 662 aa17.57■□□□□ 0.4
CLN3-254ENST00000637050 GALR2O43603 387 aaPredicted RBP17.57■□□□□ 0.4
CLN3-254ENST00000637050 ALPPL2P10696 532 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms