RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SPASTQ9UBP0 616 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 L3MBTL1Q9Y468 752 aa16.13■□□□□ 0.17
CLN3-252ENST00000636907 GSAPA4D1B5 854 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 FAM221BA6H8Z2 402 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 RTCAO00442 366 aaKnown RBP16.12■□□□□ 0.17
CLN3-252ENST00000636907 YY2O15391 372 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 NDUFS4O43181 175 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 DFNA5O60443 496 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 BCAS2O75934 225 aaPredicted RBP16.12■□□□□ 0.17
CLN3-252ENST00000636907 STATHP02808 62 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 ATXN3P54252 364 aaPredicted RBP16.12■□□□□ 0.17
CLN3-252ENST00000636907 SRSF11Q05519 484 aaKnown RBP16.12■□□□□ 0.17
CLN3-252ENST00000636907 TRIM25Q14258 630 aaKnown RBP16.12■□□□□ 0.17
CLN3-252ENST00000636907 ZIC1Q15915 447 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 ANKRD26P1Q6NSI1 321 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 PRR23BQ6ZRT6 265 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 GPR180Q86V85 440 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 ANKRD46Q86W74 232 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 C16orf78Q8WTQ4 265 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 STARD8Q92502 1023 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 ASB9Q96DX5 294 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 AICDAQ9GZX7 198 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 ZMYND15Q9H091 742 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 RMND5AQ9H871 391 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 SYNPO2LQ9H987 977 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 VAPAQ9P0L0 249 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 EXO1Q9UQ84 846 aaKnown RBP16.12■□□□□ 0.17
CLN3-252ENST00000636907 MAN2B2Q9Y2E5 1009 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 BTBD3Q9Y2F9 522 aa16.12■□□□□ 0.17
CLN3-252ENST00000636907 C15orf38-AP3S2A0A0A6YYH1 394 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 GABRR3A8MPY1 467 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 PIM1P11309 404 aaPredicted RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 HSD17B1P14061 328 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 TPP2P29144 1249 aaPredicted RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 BSGP35613 385 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 AHRP35869 848 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 HPCAL1P37235 193 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 AFF3P51826 1226 aaKnown RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 MAZP56270 477 aaKnown RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 WNT3P56703 355 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 C21orf59P57076 290 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 SELPLGQ14242 412 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 DNAJC14Q6Y2X3 702 aaPredicted RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 MSANTD1Q6ZTZ1 278 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 ARPINQ7Z6K5 226 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 WDR5BQ86VZ2 330 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 MSRB3Q8IXL7 192 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 RBM12BQ8IXT5 1001 aaKnown RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 TBC1D19Q8N5T2 526 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 MFSD9Q8NBP5 474 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 ZNF548Q8NEK5 533 aaPredicted RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 OR8J2Q8NGG1 315 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 SLC26A7Q8TE54 656 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 ITCHQ96J02 903 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 INPP5KQ9BT40 448 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 PAIP1Q9H074 479 aaKnown RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 KCNH6Q9H252 994 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 MYNNQ9NPC7 610 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 LHX9Q9NQ69 397 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 DOLKQ9UPQ8 538 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 MAPRE3Q9UPY8 281 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 PCDHGA4Q9Y5G9 962 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 AP1M2Q9Y6Q5 423 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 CACNA1IQ9P0X4 2223 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 LRIT2A6NDA9 550 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 ZW10O43264 779 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 AQP9O43315 295 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 SCN2BO60939 215 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 SDC3O75056 442 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 LAMP1P11279 417 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 MAGP20916 626 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 TAS2R50P59544 299 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 HNRNPKP61978 463 aaKnown RBP eCLIP16.11■□□□□ 0.17
CLN3-252ENST00000636907 CYP4F3Q08477 520 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 SRSF5Q13243 272 aaKnown RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 GTDC1Q4AE62 458 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 FAM71E1Q6IPT2 247 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 UBE3DQ7Z6J8 389 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 TMEM132CQ8N3T6 1108 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 BHLHE22Q8NFJ8 381 aaPredicted RBP16.11■□□□□ 0.17
CLN3-252ENST00000636907 PYDC1Q8WXC3 89 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 NELL1Q92832 810 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 RGMAQ96B86 450 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 MACROD1Q9BQ69 325 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 DUSP26Q9BV47 211 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 S100A14Q9HCY8 104 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 SLC6A13Q9NSD5 602 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 HRASLS2Q9NWW9 162 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 SLC25A37Q9NYZ2 338 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 ENTPD2Q9Y5L3 495 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 DNAH14Q0VDD8 3507 aa16.11■□□□□ 0.17
CLN3-252ENST00000636907 KNL1Q8NG31 2342 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 SPAG17Q6Q759 2223 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 A0A096LPI6 279 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 TRBV5-3A0A0A0MS03 114 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 OR2A25A4D2G3 310 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 C2orf74A8MZ97 194 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 LAMTOR5O43504 91 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 DNAJA2O60884 412 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 FKBP6O75344 327 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms