RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 YTHDF3Q7Z739 585 aaKnown RBP13.54□□□□□ -0.24
CLN3-249ENST00000636685 PDSS2Q86YH6 399 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 SLC13A5Q86YT5 568 aaPredicted RBP13.54□□□□□ -0.24
CLN3-249ENST00000636685 TMEM156Q8N614 296 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 GSDMBQ8TAX9 411 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 ZCCHC10Q8TBK6 192 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 SMPDL3AQ92484 453 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 DEFB126Q9BYW3 111 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 TIMMDC1Q9NPL8 285 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 ACAD8Q9UKU7 415 aa13.54□□□□□ -0.24
CLN3-249ENST00000636685 ZNF860A6NHJ4 632 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 FAM47E-STBD1D6RA91 191 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 ACOT7O00154 380 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 GOT2P00505 430 aaKnown RBP13.53□□□□□ -0.24
CLN3-249ENST00000636685 IGHG3P01860 377 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 HRGP04196 525 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 TUBB4AP04350 444 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 ERGP11308 486 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 DEKP35659 375 aaKnown RBP13.53□□□□□ -0.24
CLN3-249ENST00000636685 CCNFP41002 786 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 FBXL19-AS1Q494R0 122 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 SEM1Q6ZVN7 128 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 LRRC75A-AS1Q8N1F1 130 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 ARMC10Q8N2F6 343 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 OR2M7Q8NG81 312 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 LRRC46Q96FV0 321 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 TTC1Q99614 292 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 YIPF4Q9BSR8 244 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 TTTY12Q9BZ98 90 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 ABCF3Q9NUQ8 709 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 TRMT1Q9NXH9 659 aaKnown RBP13.53□□□□□ -0.24
CLN3-249ENST00000636685 UTP6Q9NYH9 597 aaKnown RBP13.53□□□□□ -0.24
CLN3-249ENST00000636685 KCMF1Q9P0J7 381 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 MRFAP1Q9Y605 127 aa13.53□□□□□ -0.24
CLN3-249ENST00000636685 A0A1B0GTH6 734 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 A0A1B0GVC2 190 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 HSPB2A8KAH6 182 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 G3V3Y1 287 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 ITGA10O75578 1167 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 CELA3AP09093 270 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 TMEM253P0C7T8 217 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 MAGEA5P43359 124 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 RELAQ04206 551 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 HSPB2Q16082 182 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 STX1AQ16623 288 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.52□□□□□ -0.25
CLN3-249ENST00000636685 TMEM214Q6NUQ4 689 aaKnown RBP13.52□□□□□ -0.25
CLN3-249ENST00000636685 SASS6Q6UVJ0 657 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 RBM43Q6ZSC3 357 aaKnown RBP13.52□□□□□ -0.25
CLN3-249ENST00000636685 LDB1Q86U70 411 aaPredicted RBP13.52□□□□□ -0.25
CLN3-249ENST00000636685 SLC22A16Q86VW1 577 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 TMEM251Q8N6I4 163 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 NAXEQ8NCW5 288 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 PPFIBP2Q8ND30 876 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 PSD4Q8NDX1 1056 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 NFAM1Q8NET5 270 aaPredicted RBP13.52□□□□□ -0.25
CLN3-249ENST00000636685 OR5T3Q8NGG3 340 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 OR13J1Q8NGT2 312 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 OR9A1PQ8NGU1 263 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 MAGEC3Q8TD91 643 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 TMEM158Q8WZ71 300 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 KIAA1191Q96A73 305 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 FOPNLQ96NB1 174 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 HEMGNQ9BXL5 484 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 ANKHQ9HCJ1 492 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 SLC2A6Q9UGQ3 507 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 DRG1Q9Y295 367 aaKnown RBP13.52□□□□□ -0.25
CLN3-249ENST00000636685 VPS9D1Q9Y2B5 631 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 NCKAP5O14513 1909 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 FREM3P0C091 2139 aa13.52□□□□□ -0.25
CLN3-249ENST00000636685 DSCAMO60469 2012 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 TRBV11-1A0A0K0K1C0 115 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 SAGE2PA6NJ88 616 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 A8MUA0 341 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 H7BY64 318 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 AQP7O14520 342 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 DVL2O14641 736 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 WIPF1O43516 503 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 GLSO94925 669 aaPredicted RBP13.51□□□□□ -0.25
CLN3-249ENST00000636685 CCNDBP1O95273 360 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 BMP7P18075 431 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 COMTP21964 271 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 CATSPEREQ5SY80 951 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 WLSQ5T9L3 541 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 KCTD11Q693B1 232 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 AFTPHQ6ULP2 937 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 PRSS57Q6UWY2 283 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 RGS9BPQ6ZS82 235 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 ZNF534Q76KX8 674 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 KLHDC8BQ8IXV7 354 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 LRRC45Q96CN5 670 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 PRAP1Q96NZ9 151 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 FAM118BQ9BPY3 351 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 MTRF1LQ9UGC7 380 aaKnown RBP13.51□□□□□ -0.25
CLN3-249ENST00000636685 FBXW2Q9UKT8 454 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 ERVK-11Q9UQG0 969 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 NAALAD2Q9Y3Q0 740 aa13.51□□□□□ -0.25
CLN3-249ENST00000636685 APOC4-APOC2K7ER74 178 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 SPOPO43791 374 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 B4GALT2O60909 372 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms