RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 FEZF1A0PJY2 475 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 MAGEB17A8MXT2 336 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 LCMT2O60294 686 aaKnown RBP17.36■□□□□ 0.37
CLN3-241ENST00000635861 UNC5CO95185 931 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 F10P00742 488 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 AHSGP02765 367 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 CDH1P12830 882 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 SNRPNP63162 240 aaKnown RBP17.36■□□□□ 0.37
CLN3-241ENST00000635861 RPTNQ6XPR3 784 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 MBOAT1Q6ZNC8 495 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 PDSS2Q86YH6 399 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 HORMAD2Q8N7B1 307 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 ZCCHC10Q8TBK6 192 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 CERS2Q96G23 380 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 ARL15Q9NXU5 204 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 SH2B3Q9UQQ2 575 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 NAALAD2Q9Y3Q0 740 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 CACNA1CQ13936 2221 aa17.36■□□□□ 0.37
CLN3-241ENST00000635861 PKDREJQ9NTG1 2253 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 A8MUI8 341 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 RDH16O75452 317 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 TSPAN12O95859 305 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 STATHP02808 62 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 JAK1P23458 1154 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 GABRB3P28472 473 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 CA7P43166 264 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 CASP6P55212 293 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 CDKN2DP55273 166 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 TAS2R50P59544 299 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 MEF2AQ02078 507 aaPredicted RBP17.35■□□□□ 0.37
CLN3-241ENST00000635861 RHAGQ02094 409 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 PDAP1Q13442 181 aaKnown RBP17.35■□□□□ 0.37
CLN3-241ENST00000635861 NSDHLQ15738 373 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 PHKG1Q16816 387 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 RBM20Q5T481 1227 aaKnown RBP17.35■□□□□ 0.37
CLN3-241ENST00000635861 SP5Q6BEB4 398 aaPredicted RBP17.35■□□□□ 0.37
CLN3-241ENST00000635861 FAM45BPQ6NSW5 357 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 PAPD4Q6PIY7 484 aaKnown RBP17.35■□□□□ 0.37
CLN3-241ENST00000635861 ZNF808Q8N4W9 903 aaPredicted RBP17.35■□□□□ 0.37
CLN3-241ENST00000635861 SLC5A8Q8N695 610 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 FAM45AQ8TCE6 357 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 MARVELD3Q96A59 401 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 FBXL8Q96CD0 374 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 SNF8Q96H20 258 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 PDLIM5Q96HC4 596 aaKnown RBP17.35■□□□□ 0.37
CLN3-241ENST00000635861 UTP23Q9BRU9 249 aaKnown RBP17.35■□□□□ 0.37
CLN3-241ENST00000635861 LANCL2Q9NS86 450 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 ASIC3Q9UHC3 531 aa17.35■□□□□ 0.37
CLN3-241ENST00000635861 TRGV8A0A0C4DH27 118 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 IGHV3-20A0A0C4DH32 117 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 URADA6NGE7 173 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 PRSS44E7EML9 344 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 TTI1O43156 1089 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 GALR3O60755 368 aaPredicted RBP17.34■□□□□ 0.37
CLN3-241ENST00000635861 ALOX12P18054 663 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 MST1P26927 711 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 AHRP35869 848 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 ACTN3Q08043 901 aaPredicted RBP17.34■□□□□ 0.37
CLN3-241ENST00000635861 TUBA3CQ13748 450 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 NAA30Q147X3 362 aaPredicted RBP17.34■□□□□ 0.37
CLN3-241ENST00000635861 ABRAXAS2Q15018 415 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 KRTCAP3Q53RY4 240 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 SFT2D3Q587I9 215 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 TUBA3EQ6PEY2 450 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 ABHD13Q7L211 337 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 BEST3Q8N1M1 668 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 GPATCH11Q8N954 259 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 TMEM178AQ8NBL3 297 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 MDS2Q8NDY4 140 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 NT5CQ8TCD5 201 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 THAP3Q8WTV1 239 aaPredicted RBP17.34■□□□□ 0.37
CLN3-241ENST00000635861 ALKBH8Q96BT7 664 aaKnown RBP17.34■□□□□ 0.37
CLN3-241ENST00000635861 LRRC39Q96DD0 335 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 SCMH1Q96GD3 660 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 MACROD1Q9BQ69 325 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 ZFP69BQ9UJL9 534 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 SNX12Q9UMY4 172 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 DCHS2Q6V1P9 2916 aa17.34■□□□□ 0.37
CLN3-241ENST00000635861 NDUFS4O43181 175 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 FHP07954 510 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 CD46P15529 392 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 RGS1Q08116 209 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 USP10Q14694 798 aaKnown RBP17.33■□□□□ 0.36
CLN3-241ENST00000635861 TEDDM1Q5T9Z0 273 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 CRLF3Q8IUI8 442 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 SPNS2Q8IVW8 549 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 PDIK1LQ8N165 341 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 FAM98AQ8NCA5 519 aaKnown RBP17.33■□□□□ 0.36
CLN3-241ENST00000635861 ZNF740Q8NDX6 193 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 ITLN2Q8WWU7 325 aaPredicted RBP17.33■□□□□ 0.36
CLN3-241ENST00000635861 ANKRD7Q92527 254 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 TBC1D20Q96BZ9 403 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 PEX11GQ96HA9 241 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 VWA7Q9Y334 891 aa17.33■□□□□ 0.36
CLN3-241ENST00000635861 TACC2O95359 2948 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 ASPDHA6ND91 283 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 CCL21O00585 134 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 OR1F1O43749 312 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 AGAP20933 346 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 TNFRSF8P28908 595 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms