RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 VAC14Q08AM6 782 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 HIST2H2ACQ16777 129 aaPredicted RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 TNFAIP8L3Q5GJ75 292 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ZNF678Q5SXM1 525 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 LIPJQ5W064 366 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 HIST2H2AA3Q6FI13 130 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ADNP2Q6IQ32 1131 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 GRHL2Q6ISB3 625 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 MRPL14Q6P1L8 145 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 COX15Q7KZN9 410 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 VN1R5Q7Z5H4 357 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 OR52B6Q8NGF0 335 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 RDH11Q8TC12 318 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SNRNP27Q8WVK2 155 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 STARD8Q92502 1023 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SEC16BQ96JE7 1060 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SMC6Q96SB8 1091 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 C17orf62Q9BQA9 187 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC6A16Q9GZN6 736 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 IQCGQ9H095 443 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ACTL8Q9H568 366 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 ZNF304Q9HCX3 659 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SENP1Q9P0U3 644 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 CDC14AQ9UNH5 594 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 PLLPQ9Y342 182 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC22A7Q9Y694 548 aa15.73■□□□□ 0.11
CCDC28A-202ENST00000611852 A0A0A6YYC8 382 aaPredicted RBP15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 ANKDD1BA6NHY2 528 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 I3L1I5 382 aaPredicted RBP15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 SPAG7O75391 227 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 MYL2P10916 166 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 PIM1P11309 404 aaPredicted RBP15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 HNF4AP41235 474 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 CDH13P55290 713 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 RPS18P62269 152 aaKnown RBP15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 CXADRP78310 365 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 CASP8Q14790 479 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 COL28A1Q2UY09 1125 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 UNC50Q53HI1 259 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 MLIPQ5VWP3 458 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 MED27Q6P2C8 311 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 OVCH1Q7RTY7 1134 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 PRSS41Q7RTY9 318 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 MTERF4Q7Z6M4 381 aaKnown RBP15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 LAS2Q8IYD9 372 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 L3MBTL4Q8NA19 623 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 ZSCAN1Q8NBB4 408 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 ZCCHC10Q8TBK6 192 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 UBE2E3Q969T4 207 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 CCDC126Q96EE4 140 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 L3HYPDHQ96EM0 354 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 MMABQ96EY8 250 aaPredicted RBP15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 PGM2Q96G03 612 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 NTMT1Q9BV86 223 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 RHBGQ9H310 441 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 CENPHQ9H3R5 247 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 SEMA4BQ9NPR2 832 aaPredicted RBP15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 ACSS2Q9NR19 701 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 GPN3Q9UHW5 284 aaPredicted RBP15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 TCFL5Q9UL49 500 aa15.72■□□□□ 0.11
CCDC28A-202ENST00000611852 PPP6CO00743 305 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CNOT3O75175 753 aaKnown RBP15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CLEC3AO75596 197 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CREG1O75629 220 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 KLF7O75840 302 aaPredicted RBP15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 SUPT7LO94864 414 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 NSA2O95478 260 aaKnown RBP15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 TBX6O95947 436 aaPredicted RBP15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CPA3P15088 417 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 IL1RNP18510 177 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CCNG1P51959 295 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 TRAF3Q13114 568 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 DSG2Q14126 1118 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 ARHGAP40Q5TG30 622 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 MYLK4Q86YV6 388 aaPredicted RBP15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 AFAP1L2Q8N4X5 818 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 AMER3Q8N944 861 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CCDC63Q8NA47 563 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 OR7G3Q8NG95 312 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 OR9A4Q8NGU2 314 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 ATP6V1E2Q96A05 226 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 COL26A1Q96A83 441 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 FKBP10Q96AY3 582 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CDK15Q96Q40 435 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 AICDAQ9GZX7 198 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC26A1Q9H2B4 701 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 KLHL31Q9H511 634 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 PRORYQ9H606 182 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CTSFQ9UBX1 484 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 RNF11Q9Y3C5 154 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 CACNA1BQ00975 2339 aa15.71■□□□□ 0.11
CCDC28A-202ENST00000611852 KMT2BQ9UMN6 2715 aaPredicted RBP15.71■□□□□ 0.1
CCDC28A-202ENST00000611852 SCN3AQ9NY46 2000 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 CCDC88CQ9P219 2028 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 ZNF891A8MT65 544 aaPredicted RBP15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 H0YIV9 168 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 NKX2-8O15522 239 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 TYROBPO43914 113 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 CLDN9O95484 217 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 ALBP02768 609 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms