RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ZNF358Q9NW07 568 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 CPSF2Q9P2I0 782 aaKnown RBP15.99■□□□□ 0.15
TRIM28-215ENST00000601150 PSMC3IPQ9P2W1 217 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-215ENST00000601150 MAP4K5Q9Y4K4 846 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 ASB1Q9Y576 335 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 MED13Q9UHV7 2174 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 MKRN2OSH3BPM6 223 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 FFAR3O14843 346 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 GPR42O15529 346 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 KLK8O60259 260 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 EPORP19235 508 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 GSTM2P28161 218 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 IRF8Q02556 426 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 KLC1Q07866 573 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 CHAF1BQ13112 559 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 LAPTM5Q13571 262 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 DOC2AQ14183 400 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 HERC3Q15034 1050 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 PFKFB4Q16877 469 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 VWA2Q5GFL6 755 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 PRSS58Q8IYP2 241 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 AFAP1L2Q8N4X5 818 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 PTCD3Q96EY7 689 aaKnown RBP15.98■□□□□ 0.15
TRIM28-215ENST00000601150 SEC16BQ96JE7 1060 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 EFCAB11Q9BUY7 163 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 TRIM55Q9BYV6 548 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 TGIF2Q9GZN2 237 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 P4HTMQ9NXG6 502 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 COPG2Q9UBF2 871 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 TMCO1Q9UM00 188 aa15.98■□□□□ 0.15
TRIM28-215ENST00000601150 URADA6NGE7 173 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 SGK494L7N484 410 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 PRAMEF4O60810 478 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 KLHL18O94889 574 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 SHBGP04278 402 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 EPB42P16452 691 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 ALOX12P18054 663 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 CASP2P42575 452 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 VSNL1P62760 191 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 SKP1P63208 163 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 MAT1AQ00266 395 aaKnown RBP15.97■□□□□ 0.15
TRIM28-215ENST00000601150 CHIT1Q13231 466 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 NAA30Q147X3 362 aaPredicted RBP15.97■□□□□ 0.15
TRIM28-215ENST00000601150 TBCCQ15814 346 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 RBBP7Q16576 425 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 HIST2H2ACQ16777 129 aaPredicted RBP15.97■□□□□ 0.15
TRIM28-215ENST00000601150 SYT16Q17RD7 645 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 PAGE2BQ5JRK9 111 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 PRAMEF9Q5VWM5 478 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 HIST2H2AA3Q6FI13 130 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 NIPAL1Q6NVV3 410 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 ABHD13Q7L211 337 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 PDSS2Q86YH6 399 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.97■□□□□ 0.154e-7■■■■■ 49.7
TRIM28-215ENST00000601150 TEX9Q8N6V9 391 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 C9orf43Q8TAL5 461 aaPredicted RBP15.97■□□□□ 0.15
TRIM28-215ENST00000601150 CREB3L4Q8TEY5 395 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 ABHD17AQ96GS6 310 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 VPS50Q96JG6 964 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 FER1L6-AS2Q96M78 137 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 SLC6A16Q9GZN6 736 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 SLC25A18Q9H1K4 315 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 PPCSQ9HAB8 311 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 XPR1Q9UBH6 696 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 C3orf18Q9UK00 162 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 NAALAD2Q9Y3Q0 740 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 ANGPTL3Q9Y5C1 460 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 TNPO3Q9Y5L0 923 aaKnown RBP15.97■□□□□ 0.15
TRIM28-215ENST00000601150 HS3ST3B1Q9Y662 390 aa15.97■□□□□ 0.15
TRIM28-215ENST00000601150 AGPSO00116 658 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 RDH16O75452 317 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 DNAJB5O75953 348 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 C1QL1O75973 258 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 SERPINA6P08185 405 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 ZNF888P0CJ79 500 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-215ENST00000601150 CCL11P51671 97 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 EMP2P54851 167 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 STXBP1P61764 594 aaKnown RBP15.96■□□□□ 0.15
TRIM28-215ENST00000601150 PCDH1Q08174 1060 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 HYAL2Q12891 473 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 E2F2Q14209 437 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 PCBP2Q15366 365 aaKnown RBP eCLIP15.96■□□□□ 0.15
TRIM28-215ENST00000601150 TOR1AIP1Q5JTV8 583 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 METTL2BQ6P1Q9 378 aaKnown RBP15.96■□□□□ 0.15
TRIM28-215ENST00000601150 WDR93Q6P2C0 686 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 LAPTM4BQ86VI4 370 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 LCA5Q86VQ0 697 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 ZC3H7AQ8IWR0 971 aaKnown RBP15.96■□□□□ 0.15
TRIM28-215ENST00000601150 ZNF843Q8N446 348 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 MRPL57Q9BQC6 102 aaKnown RBP15.96■□□□□ 0.15
TRIM28-215ENST00000601150 MRPL46Q9H2W6 279 aaKnown RBP15.96■□□□□ 0.15
TRIM28-215ENST00000601150 HCN3Q9P1Z3 774 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 TBK1Q9UHD2 729 aa15.96■□□□□ 0.15
TRIM28-215ENST00000601150 COL6A6A6NMZ7 2263 aa15.96■□□□□ 0.14
TRIM28-215ENST00000601150 TNRC6AQ8NDV7 1962 aaKnown RBP15.95■□□□□ 0.14
TRIM28-215ENST00000601150 ANKDD1BA6NHY2 528 aa15.95■□□□□ 0.14
TRIM28-215ENST00000601150 IDSB3KWA1 339 aa15.95■□□□□ 0.14
TRIM28-215ENST00000601150 SOCS6O14544 535 aa15.95■□□□□ 0.14
TRIM28-215ENST00000601150 GALR3O60755 368 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-215ENST00000601150 SMIM24O75264 130 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms