RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ZNF501Q96CX3 271 aaPredicted RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 C19orf60Q96EN9 201 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 SERPINI1Q99574 410 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 SIKE1Q9BRV8 207 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 NLNQ9BYT8 704 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 SLC6A16Q9GZN6 736 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 MEAF6Q9HAF1 191 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 FBXO8Q9NRD0 319 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 NMRK1Q9NWW6 199 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 OCIAD1Q9NX40 245 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 SERTAD3Q9UJW9 196 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 USH1CQ9Y6N9 552 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 CCDC187A0A096LP49 1063 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 FITM1A5D6W6 292 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 NPIPB8E9PQR5 432 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 P2RX6O15547 441 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 SKAP2O75563 359 aaPredicted RBP13.68□□□□□ -0.22
UPF1-211ENST00000600868 OR2B3O76000 313 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 TGFB1P01137 390 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 EIF2S1P05198 315 aaKnown RBP13.68□□□□□ -0.22
UPF1-211ENST00000600868 JUNP05412 331 aaKnown RBP13.68□□□□□ -0.22
UPF1-211ENST00000600868 SERPIND1P05546 499 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 LINC00032P0C843 101 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 ALOX15P16050 662 aaPredicted RBP13.68□□□□□ -0.22
UPF1-211ENST00000600868 ARFIP1P53367 373 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 SEC24CP53992 1094 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 EMP3P54852 163 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 ITGA1P56199 1179 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 STXBP1P61764 594 aaKnown RBP13.68□□□□□ -0.22
UPF1-211ENST00000600868 CUL3Q13618 768 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 IL11RAQ14626 422 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 PDCD2Q16342 344 aaPredicted RBP13.68□□□□□ -0.22
UPF1-211ENST00000600868 TMEM35AQ53FP2 167 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 XKR7Q5GH72 579 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 DEPDC1Q5TB30 811 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 YOD1Q5VVQ6 348 aaPredicted RBP13.68□□□□□ -0.22
UPF1-211ENST00000600868 TLDC1Q6P9B6 456 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 CHSY3Q70JA7 882 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 RAB11FIP2Q7L804 512 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 DDIASQ8IXT1 998 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 GPR135Q8IZ08 494 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 GALNT15Q8N3T1 639 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 OR1L3Q8NH93 324 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 OR6C1Q96RD1 312 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 HBEGFQ99075 208 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 ACPTQ9BZG2 426 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 SPRTNQ9H040 489 aaPredicted RBP13.68□□□□□ -0.22
UPF1-211ENST00000600868 OR51B5Q9H339 312 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 VPS29Q9UBQ0 182 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 RARRES3Q9UL19 164 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 LOXL2Q9Y4K0 774 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 CCL27Q9Y4X3 112 aa13.68□□□□□ -0.22
UPF1-211ENST00000600868 PIEZO1Q92508 2521 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 CNOT1A5YKK6 2376 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 URADA6NGE7 173 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 RGS14O43566 566 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 RSL1D1O76021 490 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 SEMA3DO95025 777 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 ETHE1O95571 254 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 STATHP02808 62 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 CTSBP07858 339 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 TROVE2P10155 538 aaKnown RBP eCLIP13.67□□□□□ -0.22
UPF1-211ENST00000600868 FGF5P12034 268 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 PRPH2P23942 346 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 HNRNPH1P31943 449 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 FOXM1Q08050 763 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 TARDBPQ13148 414 aaKnown RBP eCLIP13.67□□□□□ -0.22
UPF1-211ENST00000600868 GRM7Q14831 915 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 IMPG1Q17R60 797 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 HKDC1Q2TB90 917 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 GARNL3Q5VVW2 1013 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 KHDRBS2Q5VWX1 349 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 TMEM214Q6NUQ4 689 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 Q6ZSR9 355 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 TMPRSS7Q7RTY8 843 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 MAVSQ7Z434 540 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 ARHGEF39Q8N4T4 335 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 TTC29Q8NA56 475 aaPredicted RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 KCT2Q8NC54 265 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 SRFBP1Q8NEF9 429 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 WDR36Q8NI36 951 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 STON2Q8WXE9 905 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 MS4A6EQ96DS6 147 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 METTL2AQ96IZ6 378 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 C3orf30Q96M34 536 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 MACROD1Q9BQ69 325 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 CENPKQ9BS16 269 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 TRIM55Q9BYV6 548 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 NUF2Q9BZD4 464 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 REXO4Q9GZR2 422 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 AICDAQ9GZX7 198 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 EPN3Q9H201 632 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 PRM3Q9NNZ6 103 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 RIC8BQ9NVN3 520 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 SLC12A4Q9UP95 1085 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 RUVBL1Q9Y265 456 aaKnown RBP13.67□□□□□ -0.22
UPF1-211ENST00000600868 PTGDR2Q9Y5Y4 395 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 SLC22A7Q9Y694 548 aa13.67□□□□□ -0.22
UPF1-211ENST00000600868 HYKKA2RU49 373 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 SDHDO14521 159 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms