RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SLC34A3Q8N130 599 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 DNAJB8Q8NHS0 232 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 RELTQ969Z4 430 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 TM4SF19Q96DZ7 209 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 SNF8Q96H20 258 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 UTP23Q9BRU9 249 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 TRIM54Q9BYV2 358 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 RNF32Q9H0A6 362 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 RHBGQ9H310 441 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 ENTPD4Q9Y227 616 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 SLC16A5O15375 505 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 PRF1P14222 555 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 CCND1P24385 295 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 GRNP28799 593 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 CD96P40200 585 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 AGTR2P50052 363 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 SP140Q13342 867 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 TUBA3CQ13748 450 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 OR1C1Q15619 314 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 DEFB134Q4QY38 66 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 CATSPEREQ5SY80 951 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 SPINK14Q6IE38 97 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 TUBA3EQ6PEY2 450 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 MRGPRGQ86SM5 289 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 ZNF740Q8NDX6 193 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 CCDC120Q96HB5 630 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 PWWP2AQ96N64 755 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 TSNARE1Q96NA8 513 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 SIGLEC12Q96PQ1 595 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 LPAR4Q99677 370 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 HAUS8Q9BT25 410 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 SGPP1Q9BX95 441 aa16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 DDX47Q9H0S4 455 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-223ENST00000600552 A8MUA0 341 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 DNALI1O14645 258 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 CHST10O43529 356 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 ZNF888P0CJ79 500 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 ESRRAP11474 423 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 TNFRSF8P28908 595 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 FNTAP49354 379 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 CASP6P55212 293 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 CSHL1Q14406 222 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 HERC3Q15034 1050 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 EXT1Q16394 746 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 MEP1AQ16819 746 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 HECTD2Q5U5R9 776 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 TBC1D19Q8N5T2 526 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 M1APQ8TC57 530 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 CERS2Q96G23 380 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 CDCP1Q9H5V8 836 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 CHMP2BQ9UQN3 213 aa16.55■□□□□ 0.24
SHKBP1-223ENST00000600552 PCNX1Q96RV3 2341 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 GABRR3A8MPY1 467 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 NPIPA5E9PKD4 350 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 NDC80O14777 642 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 ZNHIT1O43257 154 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 TTC4O95801 387 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 CD46P15529 392 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 EEF1DP29692 281 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 TAS2R50P59544 299 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 RAB8AP61006 207 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 RHAGQ02094 409 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 ALDH6A1Q02252 535 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 RGS1Q08116 209 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 USP10Q14694 798 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 RBBP5Q15291 538 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 ZXDCQ2QGD7 858 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 DUPD1Q68J44 220 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 MCEMP1Q8IX19 187 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 KIF2BQ8N4N8 673 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 ACTRT1Q8TDG2 376 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 ITLN2Q8WWU7 325 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 PTCHD1Q96NR3 888 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 OR4K3Q96R72 315 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 NPAS2Q99743 824 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 SPNS1Q9H2V7 528 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 LANCL2Q9NS86 450 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 TRMT1Q9NXH9 659 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 NPIPA1Q9UND3 350 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 VWA7Q9Y334 891 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 DYRK1BQ9Y463 629 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 SLC22A7Q9Y694 548 aa16.54■□□□□ 0.24
SHKBP1-223ENST00000600552 TRBC2A0A5B9 178 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 FHP07954 510 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 ALOX12P18054 663 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 ELK3P41970 407 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 SLC26A5P58743 744 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 C3AR1Q16581 482 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 MAPKAPK3Q16644 382 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 TEDDM1Q5T9Z0 273 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 PCGF5Q86SE9 256 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 TICAM1Q8IUC6 712 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 ANKMY2Q8IV38 441 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 KLHL7Q8IXQ5 586 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 SLC5A8Q8N695 610 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 PLPP5Q8NEB5 264 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 SLC5A11Q8WWX8 675 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 TBC1D20Q96BZ9 403 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 MAGED4Q96JG8 741 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 CAPZA3Q96KX2 299 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms