RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 MED13Q9UHV7 2174 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 SNRPAP09012 282 aaKnown RBP15.35■□□□□ 0.05
LSM4-206ENST00000600289 MYBL2P10244 700 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 MTHFD2P13995 350 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 MMP11P24347 488 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 GDF5P43026 501 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 AVPR1BP47901 424 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 HSPA7P48741 367 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 RRADP55042 308 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 MEF2AQ02078 507 aaPredicted RBP15.35■□□□□ 0.05
LSM4-206ENST00000600289 OCA2Q04671 838 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 PDK4Q16654 411 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 TSNAXIP1Q2TAA8 658 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 LGSNQ5TDP6 509 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 NIPAL1Q6NVV3 410 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 METTL2BQ6P1Q9 378 aaKnown RBP15.35■□□□□ 0.05
LSM4-206ENST00000600289 TIFABQ6ZNK6 161 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 PPP1R32Q7Z5V6 425 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 ANKRD53Q8N9V6 530 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 ZNF740Q8NDX6 193 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 TRPV3Q8NET8 790 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 STT3BQ8TCJ2 826 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 MMABQ96EY8 250 aaPredicted RBP15.35■□□□□ 0.05
LSM4-206ENST00000600289 SLC25A18Q9H1K4 315 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 ANKZF1Q9H8Y5 726 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 MKKSQ9NPJ1 570 aaPredicted RBP15.35■□□□□ 0.05
LSM4-206ENST00000600289 SEMA3GQ9NS98 782 aa15.35■□□□□ 0.05
LSM4-206ENST00000600289 MRPS2Q9Y399 296 aaKnown RBP15.35■□□□□ 0.05
LSM4-206ENST00000600289 SCN3AQ9NY46 2000 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 CELSR2Q9HCU4 2923 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 A0A0A6YYC8 382 aaPredicted RBP15.34■□□□□ 0.05
LSM4-206ENST00000600289 A0A1W2PQ72 361 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 SUPT3HB4E1H0 165 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 TRIM49D1C9J1S8 452 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 MKRN2OSH3BPM6 223 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 I3L1I5 382 aaPredicted RBP15.34■□□□□ 0.05
LSM4-206ENST00000600289 UBXN8O00124 270 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 PCDH17O14917 1159 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 CLGNO14967 610 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 NDUFS4O43181 175 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 SUPT3HO75486 399 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 CEACAM4O75871 244 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 CYC1P08574 325 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 ZGLP1P0C6A0 271 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 OTX2P32243 289 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 CASP2P42575 452 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 ATP1A4Q13733 1029 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 SLC29A2Q14542 456 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 NAA30Q147X3 362 aaPredicted RBP15.34■□□□□ 0.05
LSM4-206ENST00000600289 SETDB1Q15047 1291 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 TBCCQ15814 346 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 TECRLQ5HYJ1 363 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 CPZQ66K79 652 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 GSPT2Q8IYD1 628 aaKnown RBP15.34■□□□□ 0.05
LSM4-206ENST00000600289 TTLQ8NG68 377 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 UHMK1Q8TAS1 419 aaKnown RBP15.34■□□□□ 0.05
LSM4-206ENST00000600289 MIEF2Q96C03 454 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 SLC6A16Q9GZN6 736 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 ING2Q9H160 280 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 EPN3Q9H201 632 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 VPS11Q9H270 941 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 MLXIPLQ9NP71 852 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 TMCO1Q9UM00 188 aa15.34■□□□□ 0.05
LSM4-206ENST00000600289 PCDHGA9Q9Y5G4 932 aaKnown RBP15.34■□□□□ 0.05
LSM4-206ENST00000600289 TNRC6AQ8NDV7 1962 aaKnown RBP15.33■□□□□ 0.05
LSM4-206ENST00000600289 ARGFXA6NJG6 315 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 ESPNB1AK53 854 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 K7EPI3 171 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 MAP2K7O14733 419 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 H2AFYO75367 372 aaKnown RBP15.33■□□□□ 0.04
LSM4-206ENST00000600289 EPORP19235 508 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 VARSP26640 1264 aaKnown RBP15.33■□□□□ 0.04
LSM4-206ENST00000600289 ALDH18A1P54886 795 aaKnown RBP15.33■□□□□ 0.04
LSM4-206ENST00000600289 SOX8P57073 446 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 SNRPNP63162 240 aaKnown RBP15.33■□□□□ 0.04
LSM4-206ENST00000600289 SKP1P63208 163 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 FOXK1P85037 733 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 KLC1Q07866 573 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 RGS1Q08116 209 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 HERC3Q15034 1050 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 TCTN3Q6NUS6 607 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 TMIGD1Q6UXZ0 262 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 LCA5Q86VQ0 697 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 KRT78Q8N1N4 520 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 PLD6Q8N2A8 252 aaKnown RBP15.33■□□□□ 0.04
LSM4-206ENST00000600289 FAM26EQ8N5C1 309 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 KCT2Q8NC54 265 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 C9orf43Q8TAL5 461 aaPredicted RBP15.33■□□□□ 0.04
LSM4-206ENST00000600289 EXT2Q93063 718 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 PTCD3Q96EY7 689 aaKnown RBP15.33■□□□□ 0.04
LSM4-206ENST00000600289 ABHD17AQ96GS6 310 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 FER1L6-AS2Q96M78 137 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 EFCAB11Q9BUY7 163 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 TRIM55Q9BYV6 548 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 PPCSQ9HAB8 311 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 CLK4Q9HAZ1 481 aaKnown RBP15.33■□□□□ 0.04
LSM4-206ENST00000600289 ANKHQ9HCJ1 492 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 TRPC4Q9UBN4 977 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 ASB1Q9Y576 335 aa15.33■□□□□ 0.04
LSM4-206ENST00000600289 HS3ST3B1Q9Y662 390 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms