RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ADGRD1Q6QNK2 874 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 KIRREL2Q6UWL6 708 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 TAOK1Q7L7X3 1001 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 GSPT2Q8IYD1 628 aaKnown RBP15.29■□□□□ 0.04
TRIM28-213ENST00000598355 PLD6Q8N2A8 252 aaKnown RBP15.29■□□□□ 0.04
TRIM28-213ENST00000598355 TRPV3Q8NET8 790 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 CREB3L4Q8TEY5 395 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 ESAMQ96AP7 390 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 FER1L6-AS2Q96M78 137 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 CRB3Q9BUF7 120 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 CD244Q9BZW8 370 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 AICDAQ9GZX7 198 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 TRPC4Q9UBN4 977 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 PCDHGB7Q9Y5F8 929 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 CNTRLQ7Z7A1 2325 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 EXOC1LA0A1B0GW35 172 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SYCE1LA8MT33 242 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SUPT3HB4E1H0 165 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 MAP2K7O14733 419 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 PCDH17O14917 1159 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SUPT3HO75486 399 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 KLHL18O94889 574 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 BMP10O95393 424 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 TBX6O95947 436 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SERPINA6P08185 405 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SMIM10L1P0DMW3 83 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 CASP2P42575 452 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 MSH2P43246 934 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SLBPQ14493 270 aaKnown RBP eCLIP15.28■□□□□ 0.04
TRIM28-213ENST00000598355 HERC3Q15034 1050 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SETDB1Q15047 1291 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 TBCCQ15814 346 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SYT16Q17RD7 645 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 TEX35Q5T0J7 233 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 NIPAL1Q6NVV3 410 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SHISA6Q6ZSJ9 500 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 LAPTM4BQ86VI4 370 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.28■□□□□ 0.043e-8■■■■■ 27.1
TRIM28-213ENST00000598355 TTLQ8NG68 377 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 OR11G2Q8NGC1 345 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 UHMK1Q8TAS1 419 aaKnown RBP15.28■□□□□ 0.04
TRIM28-213ENST00000598355 ZCCHC10Q8TBK6 192 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.28■□□□□ 0.04
TRIM28-213ENST00000598355 EXT2Q93063 718 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 SMIM10Q96HG1 83 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 ANKHQ9HCJ1 492 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 C3orf18Q9UK00 162 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 IKBKGQ9Y6K9 419 aa15.28■□□□□ 0.04
TRIM28-213ENST00000598355 GCN1Q92616 2671 aaKnown RBP15.28■□□□□ 0.04
TRIM28-213ENST00000598355 LOC102723996A0A087X1L8 192 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 IDSB3KWA1 339 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 TRIM49D1C9J1S8 452 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 C4orf51C9J302 202 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 POC1B-GALNT4F8VUJ3 575 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 K7EPI3 171 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 PEX12O00623 359 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 FFAR3O14843 346 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 GPR42O15529 346 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 SUV39H1O43463 412 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 GALR3O60755 368 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-213ENST00000598355 S100BP04271 92 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-213ENST00000598355 ATXN8OSP0DMR3 200 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 COL6A2P12110 1019 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 ALOX12P18054 663 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 NR1D1P20393 614 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 CXCR2P25025 360 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 AGTR2P50052 363 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 MAT1AQ00266 395 aaKnown RBP15.27■□□□□ 0.04
TRIM28-213ENST00000598355 RGS1Q08116 209 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 ADPRMQ3LIE5 342 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 METTL2BQ6P1Q9 378 aaKnown RBP15.27■□□□□ 0.04
TRIM28-213ENST00000598355 KLC3Q6P597 504 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 TMIGD1Q6UXZ0 262 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 TIFABQ6ZNK6 161 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 VN1R5Q7Z5H4 357 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 SHISA5Q8N114 240 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 CNPY4Q8N129 248 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 FDCSPQ8NFU4 85 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 UTP15Q8TED0 518 aaKnown RBP15.27■□□□□ 0.04
TRIM28-213ENST00000598355 PTCD3Q96EY7 689 aaKnown RBP15.27■□□□□ 0.04
TRIM28-213ENST00000598355 SMAD5Q99717 465 aaKnown RBP15.27■□□□□ 0.04
TRIM28-213ENST00000598355 MESP1Q9BRJ9 268 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 EFCAB11Q9BUY7 163 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 SLC25A23Q9BV35 468 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 NUDT9Q9BW91 350 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 ANKZF1Q9H8Y5 726 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 FBXL4Q9UKA2 621 aa15.27■□□□□ 0.04
TRIM28-213ENST00000598355 NBASA2RRP1 2371 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 BAHCC1Q9P281 2608 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 CLGNO14967 610 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 RDH16O75452 317 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 WFS1O76024 890 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 SNRPAP09012 282 aaKnown RBP15.26■□□□□ 0.03
TRIM28-213ENST00000598355 GLRBP48167 497 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 CCL11P51671 97 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 ALDH18A1P54886 795 aaKnown RBP15.26■□□□□ 0.03
TRIM28-213ENST00000598355 AIMP2Q13155 320 aaKnown RBP15.26■□□□□ 0.03
TRIM28-213ENST00000598355 DOC2AQ14183 400 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 SLC29A2Q14542 456 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 MYBPC3Q14896 1274 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms