RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 UROSP10746 265 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 VARSP26640 1264 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 PRDX3P30048 256 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 UQCRFS1P47985 274 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 KRT6CP48668 564 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 POLE2P56282 527 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 PHEXP78562 749 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 PCDH1Q08174 1060 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 IFT88Q13099 833 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 CPSF6Q16630 551 aaKnown RBP eCLIP11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 PERM1Q5SV97 790 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 CATSPEREQ5SY80 951 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 NKAIN2Q5VXU1 208 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 KANK2Q63ZY3 851 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 CLEC6AQ6EIG7 209 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 MED27Q6P2C8 311 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 CPLX4Q7Z7G2 160 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 TRIM73Q86UV7 250 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 VASH2Q86V25 355 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 CLYBLQ8N0X4 340 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 L3MBTL4Q8NA19 623 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 ZSCAN1Q8NBB4 408 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 ABHD11Q8NFV4 315 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 PIWIL2Q8TC59 973 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 METTL6Q8TCB7 284 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 CCT6BQ92526 530 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 WDR34Q96EX3 536 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 TGM7Q96PF1 710 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 ZNF317Q96PQ6 595 aaPredicted RBP11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 DPYSL5Q9BPU6 564 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 DPH7Q9BTV6 452 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 TRIM55Q9BYV6 548 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 PITHD1Q9GZP4 211 aaPredicted RBP11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 RAB33BQ9H082 229 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 ELOVL6Q9H5J4 265 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 SLC6A20Q9NP91 592 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 PFDN4Q9NQP4 134 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 TMEM184CQ9NVA4 438 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 CUEDC1Q9NWM3 386 aaPredicted RBP11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 VTI1BQ9UEU0 232 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 EPHA6Q9UF33 1036 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 ZDHHC2Q9UIJ5 367 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 HAO1Q9UJM8 370 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 SNX6Q9UNH7 406 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 RNF11Q9Y3C5 154 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 TRAF6Q9Y4K3 522 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 ANKRD12Q6UB98 2062 aa11.54□□□□□ -0.56
SHKBP1-213ENST00000597325 WIPF3A6NGB9 483 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 TMEM233B4DJY2 109 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 H7BY64 318 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 FFAR3O14843 346 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 CAPN5O15484 640 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 GPR42O15529 346 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 SKAP2O75563 359 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 RASSF9O75901 435 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 PCNAP12004 261 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 EZRP15311 586 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 MAGP20916 626 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 CASP2P42575 452 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 SEC24CP53992 1094 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 PPP1CAP62136 330 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 REEP5Q00765 189 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 ZRSR2Q15696 482 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 PDCD2Q16342 344 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 MANEAQ5SRI9 462 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 C10orf62Q5T681 223 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 FHL5Q5TD97 284 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 C1QL3Q5VWW1 255 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 BORAQ6PGQ7 559 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 WDR74Q6RFH5 385 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 FAM92BQ6ZTR7 304 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 ATCAYQ86WG3 371 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 FAM20CQ8IXL6 584 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 FLVCR1-AS1Q8TAF5 88 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 PRAP1Q96NZ9 151 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 KCNA7Q96RP8 456 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 SIKE1Q9BRV8 207 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 TWSG1Q9GZX9 223 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 SEMA6CQ9H3T2 930 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 LRRN3Q9H3W5 708 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 NPHS2Q9NP85 383 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 PNPOQ9NVS9 261 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 PCDHGA11Q9Y5H2 935 aa11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 MN1Q10571 1320 aaPredicted RBP11.53□□□□□ -0.56
SHKBP1-213ENST00000597325 DCHS2Q6V1P9 2916 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 KCNE1BA0A087WTH5 132 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 A0A1B0GTL3 188 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 TRBC2A0A5B9 178 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 TRPC5OSA6NMA1 111 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 H0YIV9 168 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 PLD2O14939 933 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 HDAC3O15379 428 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 B4GAT1O43505 415 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 SEMA7AO75326 666 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 WFS1O76024 890 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 TGDSO95455 350 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 CPNE6O95741 557 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 FGF4P08620 206 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 CD1CP29017 333 aa11.52□□□□□ -0.57
SHKBP1-213ENST00000597325 SERPINB1P30740 379 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms