RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CCDC88CQ9P219 2028 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 MYOFQ9NZM1 2061 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 CENPXA8MT69 81 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 M0QX08 132 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 PTHP01270 115 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 PRKACAP17612 351 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 CYP2A7P20853 494 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 AOAHP28039 575 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 AP1S1P61966 158 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 MRPL58Q14197 206 aaKnown RBP14.72□□□□□ -0.05
UPF1-204ENST00000596842 LGI4Q8N135 537 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 CELF2-AS1Q8N7Q2 184 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 VPS37AQ8NEZ2 397 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 CMTM7Q96FZ5 175 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 VMP1Q96GC9 406 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 NIPSNAP1Q9BPW8 284 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 NDRG4Q9ULP0 352 aaKnown RBP14.72□□□□□ -0.05
UPF1-204ENST00000596842 PCDHGA6Q9Y5G7 932 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 MANSC4A6NHS7 340 aaPredicted RBP14.72□□□□□ -0.05
UPF1-204ENST00000596842 ICMTO60725 284 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 SOX14O95416 240 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 PTPN6P29350 595 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 GZMMP51124 257 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 MC1RQ01726 317 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 ELP6Q0PNE2 266 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 CCDC85BQ15834 202 aaPredicted RBP14.72□□□□□ -0.05
UPF1-204ENST00000596842 SPANXN2Q5MJ10 180 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 LRIF1Q5T3J3 769 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 USP43Q70EL4 1123 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 DNAJB7Q7Z6W7 309 aaPredicted RBP14.72□□□□□ -0.05
UPF1-204ENST00000596842 TMPRSS11BQ86T26 416 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 LYSMD2Q8IV50 215 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 ZNF366Q8N895 744 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 HJURPQ8NCD3 748 aaPredicted RBP14.72□□□□□ -0.05
UPF1-204ENST00000596842 C11orf16Q9NQ32 467 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 OR2A25A4D2G3 310 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 TMEM202A6NGA9 273 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 FZD6O60353 706 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 BDKRB1P46663 353 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 KEAP1Q14145 624 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 PROX2Q3B8N5 592 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 COX20Q5RI15 118 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 SNAP47Q5SQN1 464 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 ATL1Q8WXF7 558 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 ACAT2Q9BWD1 397 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 BEX2Q9BXY8 128 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 SLC29A3Q9BZD2 475 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 ABCB8Q9NUT2 735 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 MS4A12Q9NXJ0 267 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 TMEM189-UBE2V1I3L0A0 370 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 CTDSP2O14595 271 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 SERPINI2O75830 405 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 UPK1BO75841 260 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 CKMT1AP12532 417 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 HMGA1P17096 107 aaKnown RBP14.71□□□□□ -0.05
UPF1-204ENST00000596842 CHI3L1P36222 383 aaPredicted RBP14.71□□□□□ -0.05
UPF1-204ENST00000596842 MLLT3P42568 568 aaPredicted RBP14.71□□□□□ -0.05
UPF1-204ENST00000596842 AKR1D1P51857 326 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 B4GALNT1Q00973 533 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 AGAP7PQ5VUJ5 663 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 CCBE1Q6UXH8 406 aaPredicted RBP14.71□□□□□ -0.05
UPF1-204ENST00000596842 CHST9Q7L1S5 443 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 EIF3MQ7L2H7 374 aaKnown RBP14.71□□□□□ -0.05
UPF1-204ENST00000596842 HMGN2P46Q86SG4 172 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 NEK6Q9HC98 313 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 ZDHHC3Q9NYG2 299 aa14.71□□□□□ -0.05
UPF1-204ENST00000596842 SNTNA6NMZ2 147 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 GABRR3A8MPY1 467 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 MED26O95402 600 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 ETHE1O95571 254 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 TGFB1P01137 390 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 PPIGQ13427 754 aaKnown RBP eCLIP14.71□□□□□ -0.066e-10■□□□□ 11.2
UPF1-204ENST00000596842 GAB1Q13480 694 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 DOC2AQ14183 400 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 E2F2Q14209 437 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 TSTQ16762 297 aaKnown RBP14.71□□□□□ -0.06
UPF1-204ENST00000596842 EXOC3L2Q2M3D2 409 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 TRIM71Q2Q1W2 868 aaKnown RBP14.71□□□□□ -0.06
UPF1-204ENST00000596842 TCAIMQ8N3R3 496 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 NFKBIDQ8NI38 313 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 CSGALNACT1Q8TDX6 532 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 APH1BQ8WW43 257 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 CFAP97Q9P2B7 532 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 AP3M1Q9Y2T2 418 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 YIPF1Q9Y548 306 aa14.71□□□□□ -0.06
UPF1-204ENST00000596842 VWA8A3KMH1 1905 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 EIF2DP41214 584 aaKnown RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 ATN1P54259 1190 aaPredicted RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 LMAN2Q12907 356 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 CSTF3Q12996 717 aaKnown RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 STK11Q15831 433 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 FAM209AQ5JX71 171 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 BBS7Q8IWZ6 715 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 WDR36Q8NI36 951 aaKnown RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 VANGL1Q8TAA9 524 aaPredicted RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 UBASH3BQ8TF42 649 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 GGHQ92820 318 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 CASD1Q96PB1 797 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 VPS35Q96QK1 796 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 H3BM21 787 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms