RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NIPAL1Q6NVV3 410 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 AMER3Q8N944 861 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 KCT2Q8NC54 265 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 MZB1Q8WU39 189 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 CAVIN3Q969G5 261 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 SPSB2Q99619 263 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 MACROD1Q9BQ69 325 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 ADNPQ9H2P0 1102 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 ANKHQ9HCJ1 492 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 MKKSQ9NPJ1 570 aaPredicted RBP11.3□□□□□ -0.6
LIG3-213ENST00000590630 C14orf105Q9NVL8 296 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 CPSF2Q9P2I0 782 aaKnown RBP11.3□□□□□ -0.6
LIG3-213ENST00000590630 TRPC4Q9UBN4 977 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 TUBD1Q9UJT1 453 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 RALYQ9UKM9 306 aaKnown RBP11.3□□□□□ -0.6
LIG3-213ENST00000590630 BSNQ9UPA5 3926 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 STX16-NPEPL1H3BU86 382 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 STX16O14662 325 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 PRAMEF4O60810 478 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 SMIM24O75264 130 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 WFS1O76024 890 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 SERPIND1P05546 499 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 UMODP07911 640 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 SERPINA6P08185 405 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 GSTA1P08263 222 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 NUDT17P0C025 328 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 ZGLP1P0C6A0 271 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 IL1RNP18510 177 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 EPORP19235 508 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 MMP11P24347 488 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 HPDP32754 393 aaPredicted RBP11.29□□□□□ -0.6
LIG3-213ENST00000590630 SLCO1A2P46721 670 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 POLE2P56282 527 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 CHIT1Q13231 466 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 DOC2AQ14183 400 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 PRAMEF9Q5VWM5 478 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 ABHD13Q7L211 337 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 MRGPREQ86SM8 312 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 APLFQ8IW19 511 aaPredicted RBP11.29□□□□□ -0.6
LIG3-213ENST00000590630 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.29□□□□□ -0.65e-6■■■■■ 81.8
LIG3-213ENST00000590630 AFAP1L2Q8N4X5 818 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 OR9A4Q8NGU2 314 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 ZCCHC10Q8TBK6 192 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 STT3BQ8TCJ2 826 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 EPS8L3Q8TE67 593 aaKnown RBP11.29□□□□□ -0.6
LIG3-213ENST00000590630 SLC39A7Q92504 469 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 MIEF2Q96C03 454 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 MOCOSQ96EN8 888 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 BBC3Q96PG8 261 aaPredicted RBP11.29□□□□□ -0.6
LIG3-213ENST00000590630 PARD6BQ9BYG5 372 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 TGIF2Q9GZN2 237 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 SLC6A16Q9GZN6 736 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 SEMA3GQ9NS98 782 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 RAB21Q9UL25 225 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 MRPS2Q9Y399 296 aaKnown RBP11.29□□□□□ -0.6
LIG3-213ENST00000590630 ANGPTL3Q9Y5C1 460 aa11.29□□□□□ -0.6
LIG3-213ENST00000590630 SCN2AQ99250 2005 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 PRRC2CQ9Y520 2896 aaKnown RBP11.28□□□□□ -0.6
LIG3-213ENST00000590630 ANKDD1BA6NHY2 528 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 PEX12O00623 359 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 E2F3O00716 465 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 UGDHO60701 494 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 CLEC3AO75596 197 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 KLHL18O94889 574 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 IGHEP01854 428 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 FAM87AP0C7U9 286 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 PYGBP11216 843 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 ALOX12P18054 663 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 KRT15P19012 456 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 CD22P20273 847 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 OTX2P32243 289 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 RRADP55042 308 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 STXBP1P61764 594 aaKnown RBP11.28□□□□□ -0.6
LIG3-213ENST00000590630 KLC1Q07866 573 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 HIST2H2ACQ16777 129 aaPredicted RBP11.28□□□□□ -0.6
LIG3-213ENST00000590630 SOWAHCQ53LP3 525 aaPredicted RBP11.28□□□□□ -0.6
LIG3-213ENST00000590630 HIST2H2AA3Q6FI13 130 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 MED25Q71SY5 747 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 PRSS41Q7RTY9 318 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 RIBC1Q8N443 379 aaPredicted RBP11.28□□□□□ -0.6
LIG3-213ENST00000590630 TMEM151AQ8N4L1 468 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 MREGQ8N565 214 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 TEX9Q8N6V9 391 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 PTGR2Q8N8N7 351 aaPredicted RBP11.28□□□□□ -0.6
LIG3-213ENST00000590630 TMEM102Q8N9M5 508 aaPredicted RBP11.28□□□□□ -0.6
LIG3-213ENST00000590630 CREB3L4Q8TEY5 395 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 UBE2E3Q969T4 207 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 PHF21BQ96EK2 531 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 CRB3Q9BUF7 120 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 YIPF2Q9BWQ6 316 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 ING2Q9H160 280 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 RHBGQ9H310 441 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 SOX17Q9H6I2 414 aaPredicted RBP11.28□□□□□ -0.6
LIG3-213ENST00000590630 DCDC2Q9UHG0 476 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 NAALAD2Q9Y3Q0 740 aa11.28□□□□□ -0.6
LIG3-213ENST00000590630 PCSK5Q92824 1860 aa11.27□□□□□ -0.6
LIG3-213ENST00000590630 DOCK10Q96BY6 2186 aa11.27□□□□□ -0.6
LIG3-213ENST00000590630 SMIM23A6NLE4 172 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 EIF4E1BA6NMX2 242 aaKnown RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 GOLGA8RI6L899 631 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms