RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 MAGEL2Q9UJ55 1249 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 DSEQ9UL01 958 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 VANGL2Q9ULK5 521 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 OAZ3Q9UMX2 235 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 POLHQ9Y253 713 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CARD8Q9Y2G2 431 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 VWA7Q9Y334 891 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TESMINQ9Y4I5 508 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PCDHGB7Q9Y5F8 929 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PCDHGB1Q9Y5G3 927 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 NOX1Q9Y5S8 564 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 SNX5Q9Y5X3 404 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 B3GALT1Q9Y5Z6 326 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 A3GALT2U3KPV4 340 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CKAP5Q14008 2032 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 DIDO1Q9BTC0 2240 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 NOTCH1P46531 2555 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 NYNRINQ9P2P1 1898 aaKnown RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 RNF103-CHMP3A0A140T963 221 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 FAM95CA0A1B0GW59 222 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 SCO2A0A1W2PP80 73 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 F5H423 210 aaPredicted RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 ANGPT2O15123 496 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 PHGDHO43175 533 aaKnown RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 PSMD3O43242 534 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 COCHO43405 550 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 NDUFB5O43674 189 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 ASNA1O43681 348 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 DYRK3O43781 588 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 SCO2O43819 266 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 DLX3O60479 287 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 DPM1O60762 260 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 KATNA1O75449 491 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 DAB1O75553 588 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 UPK1BO75841 260 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 NDST3O95803 873 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CST3P01034 146 aaPredicted RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 KRT6AP02538 564 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 KRT6BP04259 564 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 S100BP04271 92 aaPredicted RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 CYP11A1P05108 521 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CCDC159P0C7I6 412 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CXCL8P10145 99 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 THRBP10828 461 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CDH1P12830 882 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 TFE3P19532 575 aaPredicted RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 IMPDH1P20839 514 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 ALAS2P22557 587 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 TCEA1P23193 301 aaKnown RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 MSX2P35548 267 aaPredicted RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 GRIA1P42261 906 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CASP3P42574 277 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 NPY2RP49146 381 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CCL11P51671 97 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 ZNF135P52742 658 aaPredicted RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 PLA2G16P53816 162 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 RAD23AP54725 363 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 AIF1P55008 147 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 TPTEP56180 551 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 HNRNPKP61978 463 aaKnown RBP eCLIP4.01□□□□□ -1.77
LIG3-211ENST00000588713 CRADDP78560 199 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 TFAMQ00059 246 aaKnown RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 SLC6A3Q01959 620 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 Q0VFX4 171 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 TAF10Q12962 218 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 SELENBP1Q13228 472 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 AQP6Q13520 282 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 USP10Q14694 798 aaKnown RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 GRM3Q14832 879 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 MAPRE1Q15691 268 aaKnown RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 KYAT1Q16773 422 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 GOLGA7BQ2TAP0 167 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 SLC10A6Q3KNW5 377 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 TIGD2Q4W5G0 525 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 C6orf183Q5T699 404 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CPZQ66K79 652 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 KCTD11Q693B1 232 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 OR6B2Q6IFH4 312 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 UGT3A1Q6NUS8 523 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 TTC23LQ6PF05 361 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CRTC3Q6UUV7 619 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 CYP2R1Q6VVX0 501 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 KIAA0408Q6ZU52 694 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 THAP5Q7Z6K1 395 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 GALNT7Q86SF2 657 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 ZC3HC1Q86WB0 502 aaKnown RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 NT5DC4Q86YG4 428 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 LRRC49Q8IUZ0 686 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 NRSN1Q8IZ57 195 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 LGI2Q8N0V4 545 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 NLGN4XQ8N0W4 816 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 SPARTQ8N0X7 666 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 ZNF567Q8N184 647 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 ZCCHC7Q8N3Z6 543 aaKnown RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 SVOPLQ8N434 492 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 FSTL5Q8N475 847 aaPredicted RBP4.01□□□□□ -1.77
LIG3-211ENST00000588713 AADATQ8N5Z0 425 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 RCBTB1Q8NDN9 531 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 ST6GALNAC3Q8NDV1 305 aa4.01□□□□□ -1.77
LIG3-211ENST00000588713 SIMC1Q8NDZ2 872 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms