RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LOC100653049A0A140TA62 436 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 H0YGG7 62 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 RASSF9O75901 435 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 KRT34O76011 436 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 C9P02748 559 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 PNLIPP16233 465 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 PTX3P26022 381 aaPredicted RBP23.96■■□□□ 1.43
SHMT1-207ENST00000580002 ARF3P61204 181 aaPredicted RBP23.96■■□□□ 1.43
SHMT1-207ENST00000580002 RPS15AP62244 130 aaKnown RBP23.96■■□□□ 1.43
SHMT1-207ENST00000580002 GPLD1P80108 840 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 KCNAB1Q14722 419 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 CACHD1Q5VU97 1274 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 KHDRBS2Q5VWX1 349 aaKnown RBP23.96■■□□□ 1.43
SHMT1-207ENST00000580002 NOXRED1Q6NXP6 359 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 CYP20A1Q6UW02 462 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 GK5Q6ZS86 529 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 FUNDC1Q8IVP5 155 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 ZDHHC12Q96GR4 267 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 CNDP2Q96KP4 475 aaKnown RBP23.96■■□□□ 1.43
SHMT1-207ENST00000580002 PRRX2Q99811 253 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 ZFYVE21Q9BQ24 234 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 ZNF717Q9BY31 904 aaPredicted RBP23.96■■□□□ 1.43
SHMT1-207ENST00000580002 ZMYND15Q9H091 742 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 SYNDIG1Q9H7V2 258 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 NCDNQ9UBB6 729 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 PCDHGB2Q9Y5G2 931 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 LRIT2A6NDA9 550 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 PLPP1O14494 284 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 CLEC3AO75596 197 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 LMNAP02545 664 aaKnown RBP23.96■■□□□ 1.43
SHMT1-207ENST00000580002 IL12AP29459 219 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 AHRP35869 848 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 NBL1P41271 181 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 GRK6P43250 576 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 HKDC1Q2TB90 917 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 RNF44Q7L0R7 432 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 COMMD6Q7Z4G1 85 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 PHOX2BQ99453 314 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 SERPINI1Q99574 410 aa23.96■■□□□ 1.43
SHMT1-207ENST00000580002 C4orf47A7E2U8 309 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 EEDO75530 441 aaKnown RBP23.95■■□□□ 1.42
SHMT1-207ENST00000580002 LDOC1O95751 146 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-207ENST00000580002 EIF2S1P05198 315 aaKnown RBP23.95■■□□□ 1.42
SHMT1-207ENST00000580002 CPA2P48052 419 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 PLA2G16P53816 162 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 ACSM2AQ08AH3 577 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 SQLEQ14534 574 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 NAA25Q14CX7 972 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 AGKQ53H12 422 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 TOR1AIP1Q5JTV8 583 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 ACSM2BQ68CK6 577 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 ZNF771Q7L3S4 317 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-207ENST00000580002 DNAJC22Q8N4W6 341 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 KRTCAP2Q8N6L1 136 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 TM4SF19Q96DZ7 209 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 SDR39U1Q9NRG7 319 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-207ENST00000580002 CCDC167Q9P0B6 97 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 ANKMY1Q9P2S6 941 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 MRPS2Q9Y399 296 aaKnown RBP23.95■■□□□ 1.42
SHMT1-207ENST00000580002 CAPN7Q9Y6W3 813 aa23.95■■□□□ 1.42
SHMT1-207ENST00000580002 TLCD2A6NGC4 264 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 ANKRD28O15084 1053 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 FKBP9O95302 570 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 SDC1P18827 310 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 ZFP36L2P47974 494 aaKnown RBP23.94■■□□□ 1.42
SHMT1-207ENST00000580002 VSX2P58304 361 aaPredicted RBP23.94■■□□□ 1.42
SHMT1-207ENST00000580002 PHEXP78562 749 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 ASPGQ86U10 573 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 METTL4Q8N3J2 472 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 OR6C4Q8NGE1 309 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 FCRL1Q96LA6 429 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 TSSK3Q96PN8 268 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 LRRN3Q9H3W5 708 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 NOP53Q9NZM5 478 aaKnown RBP23.94■■□□□ 1.42
SHMT1-207ENST00000580002 ADGRE2Q9UHX3 823 aa23.94■■□□□ 1.42
SHMT1-207ENST00000580002 PSMD12O00232 456 aaPredicted RBP23.93■■□□□ 1.42
SHMT1-207ENST00000580002 KLK1P06870 262 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 BSGP35613 385 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 GABRA4P48169 554 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 RAB8AP61006 207 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 CUL3Q13618 768 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 RPS6KA2Q15349 733 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 CSRP2Q16527 193 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 C10orf62Q5T681 223 aaPredicted RBP23.93■■□□□ 1.42
SHMT1-207ENST00000580002 FAM91A1Q658Y4 838 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 PLXDC1Q8IUK5 500 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 SHISA5Q8N114 240 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 TTLQ8NG68 377 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 PROKR1Q8TCW9 393 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 GFM2Q969S9 779 aaKnown RBP23.93■■□□□ 1.42
SHMT1-207ENST00000580002 MS4A6EQ96DS6 147 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 BRINP2Q9C0B6 783 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 REXO4Q9GZR2 422 aaKnown RBP23.93■■□□□ 1.42
SHMT1-207ENST00000580002 TMEM9BQ9NQ34 198 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 PPT2Q9UMR5 302 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 EIF3LQ9Y262 564 aaKnown RBP23.93■■□□□ 1.42
SHMT1-207ENST00000580002 SPTBP11277 2137 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 IDO1P14902 403 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 BNIP1Q12981 228 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 GSTA3Q16772 222 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms