RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 EEF1DP29692 281 aaKnown RBP19.82■□□□□ 0.76
VPS53-216ENST00000574029 GRK3P35626 688 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 ALDH6A1Q02252 535 aaKnown RBP19.82■□□□□ 0.76
VPS53-216ENST00000574029 NAE1Q13564 534 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 USP10Q14694 798 aaKnown RBP19.82■□□□□ 0.76
VPS53-216ENST00000574029 ABRAXAS2Q15018 415 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 HSP90AA5PQ58FG0 334 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 SPPL2CQ8IUH8 684 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 LGI4Q8N135 537 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 AFAP1L2Q8N4X5 818 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 SLC5A8Q8N695 610 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 TMEM178AQ8NBL3 297 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 ADAMTS18Q8TE60 1221 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 MAGOHBQ96A72 148 aaKnown RBP19.82■□□□□ 0.76
VPS53-216ENST00000574029 PEX11GQ96HA9 241 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 MAGED4Q96JG8 741 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 FRMD6Q96NE9 622 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 SARGQ9BW04 601 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 MAD1L1Q9Y6D9 718 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 GABRR3A8MPY1 467 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 FAM227AF5H4B4 570 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 CDK2AP1O14519 115 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 CDC123O75794 336 aaPredicted RBP19.81■□□□□ 0.76
VPS53-216ENST00000574029 SNRPB2P08579 225 aaKnown RBP19.81■□□□□ 0.76
VPS53-216ENST00000574029 CDH1P12830 882 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 NPPBP16860 134 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 RGS4P49798 205 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 ST13P50502 369 aaKnown RBP19.81■□□□□ 0.76
VPS53-216ENST00000574029 SMSP52788 366 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 SLC26A5P58743 744 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 ACTN3Q08043 901 aaPredicted RBP19.81■□□□□ 0.76
VPS53-216ENST00000574029 HERC3Q15034 1050 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 RASGEF1CQ8N431 466 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 NAT8LQ8N9F0 302 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.81■□□□□ 0.76
VPS53-216ENST00000574029 C2CD4AQ8NCU7 369 aaPredicted RBP19.81■□□□□ 0.76
VPS53-216ENST00000574029 ABHD11Q8NFV4 315 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 OR5T3Q8NGG3 340 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 TSLPQ969D9 159 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 LURAP1Q96LR2 239 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 NDNQ99608 321 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 RBCK1Q9BYM8 510 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 TRIM8Q9BZR9 551 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 KCNF1Q9H3M0 494 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 IARS2Q9NSE4 1012 aaKnown RBP19.81■□□□□ 0.76
VPS53-216ENST00000574029 OTOGQ6ZRI0 2925 aa19.81■□□□□ 0.76
VPS53-216ENST00000574029 ZNF860A6NHJ4 632 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 NEURL1O76050 574 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 SP1P08047 785 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 DHX9Q08211 1270 aaKnown RBP19.8■□□□□ 0.76
VPS53-216ENST00000574029 CYP1B1Q16678 543 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 PHKG1Q16816 387 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 PAQR3Q6TCH7 311 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 SIAH3Q8IW03 269 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 PALM2Q8IXS6 379 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 MYO1HQ8N1T3 1032 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 HORMAD2Q8N7B1 307 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 ZNF740Q8NDX6 193 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 OR4K1Q8NGD4 311 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 ELP5Q8TE02 316 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 ALKBH8Q96BT7 664 aaKnown RBP19.8■□□□□ 0.76
VPS53-216ENST00000574029 HAUS8Q9BT25 410 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 TSPAN10Q9H1Z9 355 aaPredicted RBP19.8■□□□□ 0.76
VPS53-216ENST00000574029 TAS2R13Q9NYV9 303 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 MEMO1Q9Y316 297 aa19.8■□□□□ 0.76
VPS53-216ENST00000574029 NPIPA5E9PKD4 350 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 GALR3O60755 368 aaPredicted RBP19.79■□□□□ 0.76
VPS53-216ENST00000574029 FHP07954 510 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 CCR8P51685 355 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 OR4D2P58180 307 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 TAS2R50P59544 299 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 OC90Q02509 493 aaPredicted RBP19.79■□□□□ 0.76
VPS53-216ENST00000574029 PWP1Q13610 501 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 CDSNQ15517 529 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 SLC25A25Q6KCM7 469 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 CCDC137Q6PK04 289 aaKnown RBP19.79■□□□□ 0.76
VPS53-216ENST00000574029 GALNTL5Q7Z4T8 443 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 FAM98AQ8NCA5 519 aaKnown RBP19.79■□□□□ 0.76
VPS53-216ENST00000574029 TBC1D20Q96BZ9 403 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 CDCP1Q9H5V8 836 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 LRFN1Q9P244 771 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 NPIPA1Q9UND3 350 aa19.79■□□□□ 0.76
VPS53-216ENST00000574029 ANKRD17O75179 2603 aaKnown RBP19.79■□□□□ 0.76
VPS53-216ENST00000574029 NDUFS4O43181 175 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 ASNA1O43681 348 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 DNAJB6O75190 326 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 CLDN14O95500 239 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 HIST1H2AGP0C0S8 130 aaPredicted RBP19.78■□□□□ 0.76
VPS53-216ENST00000574029 HIST1H2ADP20671 130 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 GABRB3P28472 473 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 CDKN2DP55273 166 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 MEF2AQ02078 507 aaPredicted RBP19.78■□□□□ 0.76
VPS53-216ENST00000574029 DUPD1Q68J44 220 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.78■□□□□ 0.76
VPS53-216ENST00000574029 RPS19BP1Q86WX3 136 aaKnown RBP19.78■□□□□ 0.76
VPS53-216ENST00000574029 ZNF295-AS1Q8N0V1 137 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 OR56A3Q8NH54 315 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 MTFMTQ96DP5 389 aaKnown RBP19.78■□□□□ 0.76
VPS53-216ENST00000574029 LINGO1Q96FE5 620 aa19.78■□□□□ 0.76
VPS53-216ENST00000574029 MS4A14Q96JA4 679 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms