RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 FAM180AQ6UWF9 173 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 ZC3HC1Q86WB0 502 aaKnown RBP17.06■□□□□ 0.32
CHD3-214ENST00000572579 PALM2Q8IXS6 379 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 BCORP1Q8N888 145 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 ANKRD53Q8N9V6 530 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 PLPP5Q8NEB5 264 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 NR4A3Q92570 626 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 MAGEB10Q96LZ2 347 aaPredicted RBP17.06■□□□□ 0.32
CHD3-214ENST00000572579 HAUS8Q9BT25 410 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 RNF32Q9H0A6 362 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.06■□□□□ 0.32
CHD3-214ENST00000572579 KLHL31Q9H511 634 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 SMYD2Q9NRG4 433 aa17.06■□□□□ 0.32
CHD3-214ENST00000572579 CROCCQ5TZA2 2017 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 SCN3AQ9NY46 2000 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 TRBC2A0A5B9 178 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 NDUFS4O43181 175 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 WISP3O95389 354 aaPredicted RBP17.05■□□□□ 0.32
CHD3-214ENST00000572579 HIST1H2AGP0C0S8 130 aaPredicted RBP17.05■□□□□ 0.32
CHD3-214ENST00000572579 SMIM10L1P0DMW3 83 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 ICAM2P13598 275 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 HIST1H2ADP20671 130 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 AP1S2P56377 157 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 TAS2R39P59534 338 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 BTBD16Q32M84 506 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 DEFB134Q4QY38 66 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 MFSD4BQ5TF39 518 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 FAM45BPQ6NSW5 357 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 STRA8Q7Z7C7 330 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 CEP97Q8IW35 865 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 BEST3Q8N1M1 668 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 FAM45AQ8TCE6 357 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 METTL21AQ8WXB1 218 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 SMIM10Q96HG1 83 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 HIST1H2AHQ96KK5 128 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 TSNARE1Q96NA8 513 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 HIST1H2AJQ99878 128 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 H2AFJQ9BTM1 129 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 TRIM31Q9BZY9 425 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 PYCARDQ9ULZ3 195 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 DIDO1Q9BTC0 2240 aaKnown RBP17.05■□□□□ 0.32
CHD3-214ENST00000572579 ZGRF1Q86YA3 2104 aa17.05■□□□□ 0.32
CHD3-214ENST00000572579 CACNA1DQ01668 2161 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 OR5H15A6NDH6 313 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 E7ESA3 106 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 CHST10O43529 356 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 PRAMEF2O60811 474 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 ZG16O60844 167 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 CYC1P08574 325 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 ZNF37AP17032 561 aaPredicted RBP17.04■□□□□ 0.32
CHD3-214ENST00000572579 RPL21P46778 160 aaKnown RBP17.04■□□□□ 0.32
CHD3-214ENST00000572579 GNG11P61952 73 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 PMP22Q01453 160 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 ZNF33BQ06732 778 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 CBLBQ13191 982 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 PWP1Q13610 501 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 SFT2D3Q587I9 215 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 ACER2Q5QJU3 275 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 C1QL3Q5VWW1 255 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 SYDE1Q6ZW31 735 aaPredicted RBP17.04■□□□□ 0.32
CHD3-214ENST00000572579 NT5CQ8TCD5 201 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 UTP15Q8TED0 518 aaKnown RBP17.04■□□□□ 0.32
CHD3-214ENST00000572579 CREB3L4Q8TEY5 395 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 SLC5A11Q8WWX8 675 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 LRRC39Q96DD0 335 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 SIGLEC12Q96PQ1 595 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 HES7Q9BYE0 225 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 SLC22A14Q9Y267 594 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 SNX24Q9Y343 169 aa17.04■□□□□ 0.32
CHD3-214ENST00000572579 NPEPPSL1A6NEC2 478 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 CXorf49A8MYA2 514 aaPredicted RBP17.03■□□□□ 0.32
CHD3-214ENST00000572579 FAM227AF5H4B4 570 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 ZNF888P0CJ79 500 aaPredicted RBP17.03■□□□□ 0.32
CHD3-214ENST00000572579 ALOX12P18054 663 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 SAT1P21673 171 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 CD96P40200 585 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 GDF5P43026 501 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 BTG2P78543 158 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 REEP5Q00765 189 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 MGAT5Q09328 741 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 PDIA2Q13087 525 aaKnown RBP17.03■□□□□ 0.32
CHD3-214ENST00000572579 TUBA3CQ13748 450 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 ABRAXAS2Q15018 415 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 ZRSR2Q15696 482 aaKnown RBP17.03■□□□□ 0.32
CHD3-214ENST00000572579 NSDHLQ15738 373 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 ZNF468Q5VIY5 522 aaPredicted RBP17.03■□□□□ 0.32
CHD3-214ENST00000572579 ABHD17BQ5VST6 288 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 TUBA3EQ6PEY2 450 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 THOC6Q86W42 341 aaKnown RBP17.03■□□□□ 0.32
CHD3-214ENST00000572579 CRLF3Q8IUI8 442 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 MDS2Q8NDY4 140 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 FBXO36Q8NEA4 188 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 FAM129AQ9BZQ8 928 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 MMP25Q9NPA2 562 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 ANKRD10Q9NXR5 420 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 ABI3Q9P2A4 366 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 ZFP69BQ9UJL9 534 aa17.03■□□□□ 0.32
CHD3-214ENST00000572579 CORO1CQ9ULV4 474 aaPredicted RBP17.03■□□□□ 0.32
CHD3-214ENST00000572579 MAGEB17A8MXT2 336 aa17.02■□□□□ 0.32
CHD3-214ENST00000572579 PRAMEF4O60810 478 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms