RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 WDR34Q96EX3 536 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 FER1L6-AS2Q96M78 137 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 GPR78Q96P69 363 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 SPSB2Q99619 263 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 CRB3Q9BUF7 120 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 SPNS1Q9H2V7 528 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 NT5DC2Q9H857 520 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 ACSS2Q9NR19 701 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 SEMA3GQ9NS98 782 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 GEMIN8Q9NWZ8 242 aaKnown RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 COPG2Q9UBF2 871 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLK3-224ENST00000568605 TBK1Q9UHD2 729 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 KCNMB2Q9Y691 235 aa12.34□□□□□ -0.43
CLK3-224ENST00000568605 V9GYY5 206 aaPredicted RBP12.34□□□□□ -0.43
CLK3-224ENST00000568605 ATRXP46100 2492 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 IGLV3-12A0A075B6K2 115 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 MKRN2OSH3BPM6 223 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 STX16-NPEPL1H3BU86 382 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 STX16O14662 325 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 UGDHO60701 494 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 GLRA3O75311 464 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 MED26O95402 600 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 SERPINA6P08185 405 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 GSTA1P08263 222 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 CYC1P08574 325 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 FURINP09958 794 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 ZGLP1P0C6A0 271 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 MTHFD2P13995 350 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 ALOX12P18054 663 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 IL1RNP18510 177 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 TAC1P20366 129 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 MMP11P24347 488 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 VARSP26640 1264 aaKnown RBP12.33□□□□□ -0.44
CLK3-224ENST00000568605 HSD17B3P37058 310 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 ARL1P40616 181 aaPredicted RBP12.33□□□□□ -0.44
CLK3-224ENST00000568605 KCNC1P48547 511 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 AGTR2P50052 363 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 TGM3Q08188 693 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 IFFO1Q0D2I5 559 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 CHIT1Q13231 466 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 KCNAB2Q13303 367 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 RASA2Q15283 850 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 PCBP2Q15366 365 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLK3-224ENST00000568605 RBBP7Q16576 425 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 MED25Q71SY5 747 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 MRGPREQ86SM8 312 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 ARHGEF39Q8N4T4 335 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 PTGR2Q8N8N7 351 aaPredicted RBP12.33□□□□□ -0.44
CLK3-224ENST00000568605 KCT2Q8NC54 265 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 ZNF740Q8NDX6 193 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 OR9A4Q8NGU2 314 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 AENQ8WTP8 325 aaKnown RBP12.33□□□□□ -0.44
CLK3-224ENST00000568605 CAVIN3Q969G5 261 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 REPS1Q96D71 796 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 SOX17Q9H6I2 414 aaPredicted RBP12.33□□□□□ -0.44
CLK3-224ENST00000568605 SLC22A11Q9NSA0 550 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 PCSK5Q92824 1860 aa12.33□□□□□ -0.44
CLK3-224ENST00000568605 TLN1Q9Y490 2541 aaKnown RBP12.32□□□□□ -0.44
CLK3-224ENST00000568605 ARGFXA6NJG6 315 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 SMIM23A6NLE4 172 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 VSTM2BA6NLU5 285 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 FOXS1O43638 330 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 KLHL41O60662 606 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 CLEC3AO75596 197 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 KLHL18O94889 574 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 NUDT17P0C025 328 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 FAM87AP0C7U9 286 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 IL10P22301 178 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 HNF4AP41235 474 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 SLCO1A2P46721 670 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 ATP1A4Q13733 1029 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 GTF2H2Q13888 395 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 COL9A2Q14055 689 aaPredicted RBP12.32□□□□□ -0.44
CLK3-224ENST00000568605 DOC2AQ14183 400 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 ERCC6LQ2NKX8 1250 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 LINC00303Q3SY05 128 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 GTF2H2CQ6P1K8 395 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 MED27Q6P2C8 311 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 TRIM40Q6P9F5 258 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 MYLK4Q86YV6 388 aaPredicted RBP12.32□□□□□ -0.44
CLK3-224ENST00000568605 DTWD1Q8N5C7 304 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 TEX9Q8N6V9 391 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 AMER3Q8N944 861 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 ANKRD53Q8N9V6 530 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 CLEC1AQ8NC01 280 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 EPS8L3Q8TE67 593 aaKnown RBP12.32□□□□□ -0.44
CLK3-224ENST00000568605 GAL3ST3Q96A11 431 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 FAR2Q96K12 515 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 MAGEB10Q96LZ2 347 aaPredicted RBP12.32□□□□□ -0.44
CLK3-224ENST00000568605 TGIF2Q9GZN2 237 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 SLC6A16Q9GZN6 736 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 ACTR8Q9H981 624 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 ZNF358Q9NW07 568 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 DCDC2Q9UHG0 476 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 ADGRE2Q9UHX3 823 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 NAALAD2Q9Y3Q0 740 aa12.32□□□□□ -0.44
CLK3-224ENST00000568605 AGPSO00116 658 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 GALR3O60755 368 aaPredicted RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 CNOT3O75175 753 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms