RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 KRT71Q3SY84 523 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 BEND6Q5SZJ8 279 aaPredicted RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 LCN10Q6JVE6 187 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 MED27Q6P2C8 311 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 LAS2Q8IYD9 372 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 AFAP1L2Q8N4X5 818 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 L3MBTL4Q8NA19 623 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 OR2Y1Q8NGV0 311 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 CREB3L4Q8TEY5 395 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 ZNF483Q8TF39 744 aaPredicted RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 THAP4Q8WY91 577 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 COL26A1Q96A83 441 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 REPS1Q96D71 796 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 APOPT1Q96IL0 206 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 SMC6Q96SB8 1091 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 NTMT1Q9BV86 223 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 IQCGQ9H095 443 aaKnown RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 IPPKQ9H8X2 491 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 ACTR8Q9H981 624 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 ANKHQ9HCJ1 492 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 SLC22A11Q9NSA0 550 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 ZNF282Q9UDV7 671 aaPredicted RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 EMCNQ9ULC0 261 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 KMT2BQ9UMN6 2715 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-208ENST00000560427 ANKDD1BA6NHY2 528 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 H0YIV9 168 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 RGS16O15492 202 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-208ENST00000560427 FOXS1O43638 330 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 PLIN3O60664 434 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 PRAMEF4O60810 478 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 KLF7O75840 302 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-208ENST00000560427 OTCP00480 354 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 PROCP04070 461 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 CYC1P08574 325 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 MYL2P10916 166 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 CD22P20273 847 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 IMPDH1P20839 514 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 FOLR3P41439 243 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 OR1D4P47884 311 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 PHEXP78562 749 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 RHDQ02161 417 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 GGTA1PQ4G0N0 100 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 PRAMEF9Q5VWM5 478 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 MLIPQ5VWP3 458 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 ZYG11AQ6WRX3 759 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 COX15Q7KZN9 410 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 SRRM1Q8IYB3 904 aaKnown RBP12.35□□□□□ -0.43
NEDD8-208ENST00000560427 C4orf33Q8N1A6 199 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 BANPQ8N9N5 519 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 KCT2Q8NC54 265 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 GAL3ST3Q96A11 431 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 L3HYPDHQ96EM0 354 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 MMABQ96EY8 250 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-208ENST00000560427 IP6K3Q96PC2 410 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 MKKSQ9NPJ1 570 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-208ENST00000560427 MAP4K5Q9Y4K4 846 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 PCDHGA11Q9Y5H2 935 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 ZFHX4Q86UP3 3567 aa12.35□□□□□ -0.43
NEDD8-208ENST00000560427 A0A088AWK7 358 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 A0A0A6YYC8 382 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 VSTM2BA6NLU5 285 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 H3BQF6 201 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 I3L1I5 382 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 PCDH17O14917 1159 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 DLX3O60479 287 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 CLDN9O95484 217 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 MLYCDO95822 493 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 SERPIND1P05546 499 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 MYZAPP0CAP1 466 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 ALOX12P18054 663 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 ZNF10P21506 573 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 IL10P22301 178 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 PIK3CBP42338 1070 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 CCNG1P51959 295 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 CYP4F2P78329 520 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 OCA2Q04671 838 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 TGM3Q08188 693 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 SSPNQ14714 243 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 NKG7Q16617 165 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 ADPRMQ3LIE5 342 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 ZNF678Q5SXM1 525 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 C16orf46Q6P387 395 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 C19orf48Q6RUI8 117 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 RAB43Q86YS6 212 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 AMER3Q8N944 861 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 SRFBP1Q8NEF9 429 aaKnown RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 OR7G3Q8NG95 312 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 PPP4R1Q8TF05 950 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 ATP6V1E2Q96A05 226 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 PGM2Q96G03 612 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 PKNOX2Q96KN3 472 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 ZIM3Q96PE6 472 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 TMEM237Q96Q45 408 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 RUFY1Q96T51 708 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 SPSB2Q99619 263 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 TGIF2Q9GZN2 237 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 STMN4Q9H169 189 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 NOL11Q9H8H0 719 aaKnown RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 SSU72Q9NP77 194 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms