RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TRAPPC9Q96Q05 1148 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 COL25A1Q9BXS0 654 aaPredicted RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 KLHL25Q9H0H3 589 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SEMA6CQ9H3T2 930 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 ACTL8Q9H568 366 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PAPOLBQ9NRJ5 636 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 TMEM45AQ9NWC5 275 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PCDHGA4Q9Y5G9 962 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 AP1M2Q9Y6Q5 423 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 TP53BP1Q12888 1972 aaPredicted RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 ANKRD28O15084 1053 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SIGLEC6O43699 453 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PCDHGA12O60330 932 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 CTSVO60911 334 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SERPIND1P05546 499 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SNRPB2P08579 225 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 SDC1P18827 310 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 ATP6V1C1P21283 382 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 CDH3P22223 829 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 OR1D5P58170 312 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 RAE1P78406 368 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 RELAQ04206 551 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 CYP4F3Q08477 520 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PTGR1Q14914 329 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 NR1D2Q14995 579 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 NR0B2Q15466 257 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 ZIC1Q15915 447 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PLA2G2CQ5R387 149 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 NKAIN2Q5VXU1 208 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 IRGCQ6NXR0 463 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 GALNT18Q6P9A2 607 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 METTL4Q8N3J2 472 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 EID2Q8N6I1 236 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 ENDOVQ8N8Q3 282 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 FAM181AQ8N9Y4 354 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 TRPV3Q8NET8 790 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PROKR1Q8TCW9 393 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SLC7A6OSQ96CW6 309 aaPredicted RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 AHCYL2Q96HN2 611 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 SLC45A3Q96JT2 553 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 F2RL3Q96RI0 385 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 RAB33BQ9H082 229 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 EPB41L1Q9H4G0 881 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SYNPO2LQ9H987 977 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SIRT5Q9NXA8 310 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 AHSPQ9NZD4 102 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PILRAQ9UKJ1 303 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 TMEM131Q92545 1883 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 CACNA1EQ15878 2313 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 IGHV1OR21-1A0A087WYE8 117 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 LRIT2A6NDA9 550 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 B2RBV5 119 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 C9JVG2 144 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 CAPN5O15484 640 aaPredicted RBP10.72□□□□□ -0.69
USP3-218ENST00000560202 B4GAT1O43505 415 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 PRAMEF10O60809 474 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 SEMA3DO95025 777 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 LINGO3P0C6S8 592 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 ST6GAL1P15907 406 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 PCSK2P16519 638 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 JAK1P23458 1154 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 TACR1P25103 407 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 PTPN4P29074 926 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 IL12AP29459 219 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 TIA1P31483 386 aaKnown RBP eCLIP10.72□□□□□ -0.69
USP3-218ENST00000560202 ATXN3P54252 364 aaPredicted RBP10.72□□□□□ -0.69
USP3-218ENST00000560202 WASHC2DQ5SRD0 308 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 LAIR1Q6GTX8 287 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 TCEAL6Q6IPX3 200 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 BLOC1S3Q6QNY0 202 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 RINLQ6ZS11 566 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 COMMD6Q7Z4G1 85 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 FAM9CQ8IZT9 166 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 MINDY1Q8N5J2 469 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 OR6C4Q8NGE1 309 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 CLHC1Q8NHS4 586 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 SLC13A3Q8WWT9 602 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 NCSTNQ92542 709 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 TCEAL3Q969E4 200 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 THAP11Q96EK4 314 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 FCRL4Q96PJ5 515 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 OR2A5Q96R48 311 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 ZFYVE21Q9BQ24 234 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 CENPKQ9BS16 269 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 RTKNQ9BST9 563 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 SLC25A23Q9BV35 468 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 EBPLQ9BY08 206 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 DPY30Q9C005 99 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 RNPEPL1Q9HAU8 725 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 C1GALT1Q9NS00 363 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 EPHA6Q9UF33 1036 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 L3MBTL1Q9Y468 752 aa10.72□□□□□ -0.69
USP3-218ENST00000560202 WDFY4Q6ZS81 3184 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 PCDH15Q96QU1 1955 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 PCM1Q15154 2024 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 LY6G6EA0A0G2JKS1 128 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 A0A0J9YVX5 310 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 FAM234BA2RU67 622 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 SLC9B1P1A6NJY1 282 aa10.71□□□□□ -0.69
USP3-218ENST00000560202 NR5A2O00482 541 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms