RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 VN1R5Q7Z5H4 357 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 CROCCP2Q86T23 111 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 EXOC3L1Q86VI1 746 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 SLC22A9Q8IVM8 553 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 ENDOVQ8N8Q3 282 aaKnown RBP16.63■□□□□ 0.25
SHMT2-225ENST00000556798 NT5CQ8TCD5 201 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 TCP10LQ8TDR4 215 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 CREB3L4Q8TEY5 395 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 PPP4R1Q8TF05 950 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 ATP6V1E2Q96A05 226 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 FAM111AQ96PZ2 611 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 DPH2Q9BQC3 489 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-225ENST00000556798 C1QTNF3Q9BXJ4 246 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 DRC3Q9H069 523 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 NT5DC2Q9H857 520 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 PRM3Q9NNZ6 103 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 SENP1Q9P0U3 644 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 IFT80Q9P2H3 777 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-225ENST00000556798 COPG2Q9UBF2 871 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 RNF11Q9Y3C5 154 aa16.63■□□□□ 0.25
SHMT2-225ENST00000556798 A0A1B0GTL3 188 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 C21orf140B9A014 251 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 PPP6CO00743 305 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 FFAR3O14843 346 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 GPR42O15529 346 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 FOXS1O43638 330 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 B3GALT4O96024 378 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 CPA3P15088 417 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 IMPDH1P20839 514 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 TMPRSS3P57727 454 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 CXADRP78310 365 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 PCDH1Q08174 1060 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 HYAL2Q12891 473 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 TRAF3Q13114 568 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 PWP1Q13610 501 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 PCLAFQ15004 111 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 NCF4Q15080 339 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 HIST2H2ACQ16777 129 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-225ENST00000556798 TNFAIP8L3Q5GJ75 292 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 TOR1AIP1Q5JTV8 583 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 HIST2H2AA3Q6FI13 130 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 MED27Q6P2C8 311 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 TRPV3Q8NET8 790 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 OR9A4Q8NGU2 314 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 RDH11Q8TC12 318 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 TRPC4APQ8TEL6 797 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 STARD8Q92502 1023 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 COL26A1Q96A83 441 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 L3HYPDHQ96EM0 354 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 MMABQ96EY8 250 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-225ENST00000556798 PGM2Q96G03 612 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 PITHD1Q9GZP4 211 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-225ENST00000556798 AICDAQ9GZX7 198 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 KLHL31Q9H511 634 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 ACTL8Q9H568 366 aa16.62■□□□□ 0.25
SHMT2-225ENST00000556798 ZNF860A6NHJ4 632 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 ANKDD1BA6NHY2 528 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 C4orf51C9J302 202 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 TYROBPO43914 113 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 CNOT3O75175 753 aaKnown RBP16.61■□□□□ 0.25
SHMT2-225ENST00000556798 CLDN9O95484 217 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 MYZAPP0CAP1 466 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 ZNF888P0CJ79 500 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-225ENST00000556798 FBLP22087 321 aaKnown RBP16.61■□□□□ 0.25
SHMT2-225ENST00000556798 RPS15P62841 145 aaKnown RBP16.61■□□□□ 0.25
SHMT2-225ENST00000556798 CLCQ05315 142 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 DDX39BQ13838 428 aaKnown RBP16.61■□□□□ 0.25
SHMT2-225ENST00000556798 CPSF6Q16630 551 aaKnown RBP eCLIP16.61■□□□□ 0.25
SHMT2-225ENST00000556798 LIPJQ5W064 366 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 PRMT9Q6P2P2 845 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 PDSS2Q86YH6 399 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 TMEM151BQ8IW70 566 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 RNF175Q8N4F7 328 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 CCNYL1Q8N7R7 359 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 TTLQ8NG68 377 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 OR4F6Q8NGB9 312 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 CCDC126Q96EE4 140 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 SLC6A16Q9GZN6 736 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 ZNF304Q9HCX3 659 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 CTSFQ9UBX1 484 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 GPN3Q9UHW5 284 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-225ENST00000556798 MID2Q9UJV3 735 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 KCND3Q9UK17 655 aa16.61■□□□□ 0.25
SHMT2-225ENST00000556798 SGK494L7N484 410 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 UGDHO60701 494 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 SH3BGRLO75368 114 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 CLEC3AO75596 197 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 TBX6O95947 436 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-225ENST00000556798 SERPINA6P08185 405 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 RAB40ALP0C0E4 278 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 PTPN4P29074 926 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 HNRNPH1P31943 449 aaKnown RBP16.6■□□□□ 0.25
SHMT2-225ENST00000556798 AVPR1BP47901 424 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 UCNP55089 124 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 RAB8AP61006 207 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 MAT1AQ00266 395 aaKnown RBP16.6■□□□□ 0.25
SHMT2-225ENST00000556798 FAM53BQ14153 422 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 SYT16Q17RD7 645 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 COL28A1Q2UY09 1125 aa16.6■□□□□ 0.25
SHMT2-225ENST00000556798 C10orf107Q8IVU9 208 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms