RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	TM4SF19	Q96DZ7	209 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	HES6	Q96HZ4	224 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	CCDC138	Q96M89	665 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	ZNF559	Q9BR84	538 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	FAM129A	Q9BZQ8	928 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	TSGA10	Q9BZW7	698 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	UCK2	Q9BZX2	261 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	TRIM45	Q9H8W5	580 aa	Predicted RBP	11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	KCNJ16	Q9NPI9	418 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	EIF2B3	Q9NR50	452 aa	Known RBP	11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	LANCL2	Q9NS86	450 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	KLHL42	Q9P2K6	505 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	VPS9D1	Q9Y2B5	631 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	NAALAD2	Q9Y3Q0	740 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	HRH3	Q9Y5N1	445 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	SLC22A7	Q9Y694	548 aa		11.88	□□□□□ -0.51
SHMT2-223	ENST00000556689	SCN2A	Q99250	2005 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	FEZF1	A0PJY2	475 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	KLRC4-KLRK1	H3BQV0	150 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	TFEC	O14948	347 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	LCMT2	O60294	686 aa	Known RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	MPC1L	P0DKB6	136 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	OGN	P20774	298 aa	Known RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	IMPA1	P29218	277 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CHRNB4	P30926	498 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	TRHR	P34981	398 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	SKIV2L2	P42285	1042 aa	Known RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	HLCS	P50747	726 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	ITGA8	P53708	1063 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	MLF1	P58340	268 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	BASP1	P80723	227 aa	Known RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CCZ1B	P86790	482 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CCZ1	P86791	482 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	TFF3	Q07654	80 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	SEL1L2	Q5TEA6	688 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CAPN13	Q6MZZ7	669 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	NEPRO	Q6NW34	567 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	C4orf22	Q6V702	233 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	RAD9B	Q6WBX8	426 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CYHR1	Q6ZMK1	362 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CENPU	Q71F23	418 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	ASPG	Q86U10	573 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CD163	Q86VB7	1156 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	SLC26A11	Q86WA9	606 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	ZNF227	Q86WZ6	799 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	SLC13A5	Q86YT5	568 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CILP2	Q8IUL8	1156 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	DMRTC2	Q8IXT2	367 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	KIF2B	Q8N4N8	673 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	MARVELD2	Q8N4S9	558 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	PRELID2	Q8N945	189 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	ZCCHC10	Q8TBK6	192 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	TSLP	Q969D9	159 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	SLC30A3	Q99726	388 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	TMUB1	Q9BVT8	246 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	RBCK1	Q9BYM8	510 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	PCBD2	Q9H0N5	130 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	CCDC177	Q9NQR7	707 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	INTS10	Q9NVR2	710 aa	Known RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	SYBU	Q9NX95	663 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	KCNN3	Q9UGI6	736 aa		11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	KLF13	Q9Y2Y9	288 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-223	ENST00000556689	FAM221A	A4D161	298 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	NKX2-6	A6NCS4	301 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	FCHO1	O14526	889 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	CDC40	O60508	579 aa	Known RBP eCLIP	11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	PRMT3	O60678	531 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	TOX	O94900	526 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	FH	P07954	510 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	HOXD4	P09016	255 aa	Predicted RBP	11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	SLC35G6	P0C7Q6	338 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	ENO3	P13929	434 aa	Predicted RBP	11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	PAM	P19021	973 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	TFEB	P19484	476 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	DNAJA1	P31689	397 aa	Known RBP	11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	GRK3	P35626	688 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	MEOX1	P50221	254 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	KIF5A	Q12840	1032 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	CUL1	Q13616	776 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	HERC3	Q15034	1050 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	UBE2R2	Q712K3	238 aa	Predicted RBP	11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	TMEM200A	Q86VY9	491 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	SULF2	Q8IWU5	870 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	CYP4X1	Q8N118	509 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	OR5T3	Q8NGG3	340 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	C16orf52	Q8NHV5	167 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	TBC1D20	Q96BZ9	403 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	CCDC68	Q9H2F9	335 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	TP63	Q9H3D4	680 aa	Predicted RBP	11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	SLC24A3	Q9HC58	644 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	SOX13	Q9UN79	622 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	RNF6	Q9Y252	685 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	DHRS7	Q9Y394	339 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	11.86	□□□□□ -0.51	4e-7	■■□□□ 12.8
SHMT2-223	ENST00000556689	GTF3C1	Q12789	2109 aa		11.86	□□□□□ -0.51
SHMT2-223	ENST00000556689	CACNA1C	Q13936	2221 aa		11.85	□□□□□ -0.51
SHMT2-223	ENST00000556689	CTAGE9	A4FU28	777 aa		11.85	□□□□□ -0.51
SHMT2-223	ENST00000556689	ZNF860	A6NHJ4	632 aa		11.85	□□□□□ -0.51
SHMT2-223	ENST00000556689	FAM90A27P	A6NNH2	459 aa		11.85	□□□□□ -0.51

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