RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 TBC1D3CQ6IPX1 549 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 LCN8Q6JVE9 175 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 CAPN13Q6MZZ7 669 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 SLCO4C1Q6ZQN7 724 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3Q8IZP1 549 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 CLECL1Q8IZS7 167 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ZNF420Q8TAQ5 688 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 FBXO30Q8TB52 745 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TFGQ92734 400 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 EFHD2Q96C19 240 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ZNF583Q96ND8 569 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 SORBS1Q9BX66 1292 aaKnown RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 OR52A5Q9H2C5 316 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 WDR26Q9H7D7 661 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 UTS2RQ9UKP6 389 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ERVK-11Q9UQG0 969 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 YY2O15391 372 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 KDM1AO60341 852 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 KLF8O95600 359 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-212ENST00000554467 CPSF4O95639 269 aaKnown RBP11.24□□□□□ -0.61
SHMT2-212ENST00000554467 STATHP02808 62 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 ACADLP28330 430 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 CLDN8P56748 225 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 CYP4F2P78329 520 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 CYP4F3Q08477 520 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 PPP1R8Q12972 351 aaKnown RBP11.24□□□□□ -0.61
SHMT2-212ENST00000554467 TRIM16LQ309B1 348 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 LIPJQ5W064 366 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 USP43Q70EL4 1123 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 GALNT10Q86SR1 603 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 KIAA1958Q8N8K9 716 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 COX14Q96I36 57 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 RNF145Q96MT1 663 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 OSBPL10Q9BXB5 764 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 XKR8Q9H6D3 395 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 SERHLQ9NQF3 203 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 CCM2LQ9NUG4 571 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-212ENST00000554467 B3GNT3Q9Y2A9 372 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 GNG14A0A1W2PPG7 69 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 IL6P05231 212 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 CDH1P12830 882 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 NEDD8Q15843 81 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 INAVAQ3KP66 663 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 LRRTM4Q86VH4 590 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 IL17RCQ8NAC3 791 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 FLCNQ8NFG4 579 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 JPH3Q8WXH2 748 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-212ENST00000554467 REXO4Q9GZR2 422 aaKnown RBP11.24□□□□□ -0.61
SHMT2-212ENST00000554467 EPHX3Q9H6B9 360 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 CARS2Q9HA77 564 aaKnown RBP11.24□□□□□ -0.61
SHMT2-212ENST00000554467 SCHIP1Q9P0W5 487 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-212ENST00000554467 DAPK2Q9UIK4 370 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 INVSQ9Y283 1065 aa11.24□□□□□ -0.61
SHMT2-212ENST00000554467 TCRBV5S2A0A599 114 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 EI24O14681 340 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 VEGFDO43915 354 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 IGFBP4P22692 258 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 NKX2-5P52952 324 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-212ENST00000554467 PNLIPRP1P54315 467 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 CLDN2P57739 230 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 EEFSECP57772 596 aaKnown RBP11.23□□□□□ -0.61
SHMT2-212ENST00000554467 ARPC4P59998 168 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 SGCGQ13326 291 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 GRHL2Q6ISB3 625 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 NUDT18Q6ZVK8 323 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 OR2T12Q8NG77 320 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 RAB7BQ96AH8 199 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 ZUFSPQ96AP4 578 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 TRIM15Q9C019 465 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 DYRK1BQ9Y463 629 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 CKAP5Q14008 2032 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 GSTA4O15217 222 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 LAMP1P11279 417 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 COX7A2P14406 83 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 HOXB2P14652 356 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 FASP25445 335 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 CTHP32929 405 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 OPRL1P41146 370 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 PPP2CBP62714 309 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 PPP2CAP67775 309 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 UGT8Q16880 541 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 PERM1Q5SV97 790 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 ENPP6Q6UWR7 440 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 ADAMTSL4Q6UY14 1074 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 PLD3Q8IV08 490 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 NCLNQ969V3 563 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 SH3KBP1Q96B97 665 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 NSMCE2Q96MF7 247 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 POLR1BQ9H9Y6 1135 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 IMP3Q9NV31 184 aaKnown RBP11.23□□□□□ -0.61
SHMT2-212ENST00000554467 TAC3Q9UHF0 121 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 OR52A4PA6NMU1 304 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 H0Y8X5 98 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 MYO1DO94832 1006 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 ANXA4P09525 319 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-212ENST00000554467 C5AR1P21730 350 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 RAE1P78406 368 aaKnown RBP11.23□□□□□ -0.61
SHMT2-212ENST00000554467 DNASE1L3Q13609 305 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 E2F2Q14209 437 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 ZNF776Q68DI1 518 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms